View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11634_low_12 (Length: 381)
Name: NF11634_low_12
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 53488343 - 53487998
Alignment:
| Q |
17 |
catcattctttaagctatgtcatttgagttattattatgttcaaaaatattggaagcattttaacaactactcaaattagtaaaaccaaggaattttagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53488343 |
catcattctttaagctatgtcatttgagttattattatgttcaaaaatattggaagcattttaacaactactcaaattaataaaaccaaggaattttagc |
53488244 |
T |
|
| Q |
117 |
agcattcttaaaagcatgcaccaccaaagttgaatcggtttctatccacaaattgtgccaataatggtgataagctatttcaattactattaaactcctt |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53488243 |
agcattcttaaaagcatgcatcaccaaagttgaatcggtttctatccacaa-ttgtgccaatgatggtgataagctatttcaatcactattaaactcctt |
53488145 |
T |
|
| Q |
217 |
gaaatctctgcatgtaaagtattctcctagccagtattcttagcaaagcagcaaatgaaatttgcatcttgattttttaaaatgcctccacatgaggagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53488144 |
gaaatctctgcatgtaaagtattctcctagccagtattcttagcaaagcagcaaatgaaatttgcatcttgattttttaaaatgcctccacatgaggagt |
53488045 |
T |
|
| Q |
317 |
tattggaagcagatgatttgtttgtattaaaattcaacggaccaacc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53488044 |
tattggaagcagatgatttgtttgtattaaaattcaacggaccaacc |
53487998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University