View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_16 (Length: 306)
Name: NF11634_low_16
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7666895 - 7667030
Alignment:
| Q |
1 |
tccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacaca--gacaaaattagatgaggaaatatcaatctaaaaaataacatcaaag |
98 |
Q |
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| T |
7666895 |
tccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaagacaaaattagatgaggaaatatcaatctaaaaaataacatcaaag |
7666994 |
T |
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| Q |
99 |
tcccctttggaaactcaaaggaagttaccttcaacc |
134 |
Q |
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| T |
7666995 |
tcccctttggaaactcaaaggaagttaccttcaacc |
7667030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 7087326 - 7087412
Alignment:
| Q |
201 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagag |
287 |
Q |
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| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagag |
7087412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 7087129 - 7087259
Alignment:
| Q |
5 |
tcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacac--agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtccc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| | |||| ||||| ||||||||| |
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| T |
7087129 |
tcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaaaacaaaactagatgaggaaatatcaacatcaaaactaacaccaaagtccc |
7087228 |
T |
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| Q |
103 |
ctttggaaactcaaaggaagttaccttcaacc |
134 |
Q |
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| T |
7087229 |
atttggaaactcaaaggaagtt-ccttcaacc |
7087259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 7667097 - 7667183
Alignment:
| Q |
201 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagag |
287 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtagagag |
7667183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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