View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11634_low_2 (Length: 857)
Name: NF11634_low_2
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 15 - 681
Target Start/End: Complemental strand, 19797609 - 19796945
Alignment:
| Q |
15 |
cagtttttagaggactcccaccagaaatgagtgttgaccagagcctaatgacattggcagtggaggtgaatgatgcacaaacttttgaaggtgcagaaag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
19797609 |
cagtttttagaggactcccaccagaaatgagtgttgaccagagccaaatgacattggcagtggaggcgagtgatgcacaaacttttgaaggtgcagaaag |
19797510 |
T |
|
| Q |
115 |
aagaatgttctaccttcttacagaaagatcataaaaaagtcttgagaacctaacatcactagaaagcaacataatacttgcaggggcaggatttttcgaa |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
19797509 |
aagaatgttataccttcttacagaaagatcataaagaagttttgagaacctaacatcactagaaagcaacataatacttgcaggggcatgatttttcaaa |
19797410 |
T |
|
| Q |
215 |
acccactttatcatatcaaacatgatgactttgcacac---tgaaataaaaacaccattataaatatggagaagttcataaaacgtgattaattatgaat |
311 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19797409 |
acccactttaacatatcaaacatgatgactttgtacacatctgaaataaaaacaccattataaatatggagaagttcataaaatgtgattaattatgaat |
19797310 |
T |
|
| Q |
312 |
gaataagtaaatacctccagtggggacgtgacatagggggatgcctgcggtggagagtgcatgttgaagcccactagcgatgagatttgtgtttccataa |
411 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19797309 |
gaataagtaaatacctccactggggacgtgacatagggggatgcctgcggtggagagtgcatgttgaagcccactagcgatgagatttgtgtttccataa |
19797210 |
T |
|
| Q |
412 |
gcagaaatggatagtttgccacgaaggttggcttttaagagagataagcgaatattattaacaatgcagtcaatactgtgaaagttttttggaatttgac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
19797209 |
gcagaaatggatagtttgccacgaaggttggcttttaagagagctaatcgaatattattaacaatgcagtcaatactgtcaaagtttgttggaatttggc |
19797110 |
T |
|
| Q |
512 |
aatttccaacgtcccaccaaactgagatatttgtatttgcattttccatagtcatctacaagtcaaattataaaatggtgagaagggatggttgtgatga |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19797109 |
aatttccaacgtcccaccaaactgagatatttgtatttgcattttccatagtcatctacaagtcaaattataaaatggtgagaagggatggttgtgatga |
19797010 |
T |
|
| Q |
612 |
tctttacaactccattcaaattgaaatttaatttgttgaaaagaggattccaaaaatttgagacctagtt |
681 |
Q |
| |
|
| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19797009 |
tttttgcaactccattcaatttgaaatttc-----ttgaaaagaggattcaaaaaatttgagacctagtt |
19796945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 780 - 836
Target Start/End: Complemental strand, 19796903 - 19796847
Alignment:
| Q |
780 |
catagggtttagattttgaaggttacctgttgaatagcgttaaggggtttcccagaa |
836 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||| |
|
|
| T |
19796903 |
catagggtttagattttgaaggttacctgctgaattgcgttaaggagtttccaagaa |
19796847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 555
Target Start/End: Complemental strand, 19796483 - 19796309
Alignment:
| Q |
384 |
actagcgatgagatttgtgtttccataagcagaaatggatagtttgccacgaaggttggcttttaagagagataagcgaatattattaacaatgcagtca |
483 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||| |||| ||||| |||||||| | || |||||| |||| ||||||| ||| ||||| ||| | |
|
|
| T |
19796483 |
actagggatgagatcggagtttccataagcagaaatggttagtctgccatgaaggttgacattggagagagctaagtgaatattcttagcaatgtagtaa |
19796384 |
T |
|
| Q |
484 |
atactgtgaaagtttt---ttggaatttgacaatttccaacgtcccaccaaactgagatatttgtatttgcattt |
555 |
Q |
| |
|
|| | ||| || | |||||| |||||| || ||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
19796383 |
atgtcatcaaaattattggttggaaattgacaggtttcaatgtcccaccaaactgaaatatttgcatttgcattt |
19796309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University