View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11634_low_20 (Length: 258)

Name: NF11634_low_20
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11634_low_20
NF11634_low_20
[»] chr5 (19 HSPs)
chr5 (19-248)||(30339514-30339740)
chr5 (19-244)||(30434714-30434936)
chr5 (19-248)||(30748531-30748757)
chr5 (19-248)||(29871074-29871300)
chr5 (19-248)||(30243361-30243587)
chr5 (19-244)||(30398957-30399179)
chr5 (19-248)||(30482292-30482518)
chr5 (19-248)||(30059245-30059471)
chr5 (19-248)||(30678157-30678386)
chr5 (22-248)||(29852187-29852410)
chr5 (19-161)||(4380630-4380772)
chr5 (35-145)||(30474363-30474473)
chr5 (21-162)||(30205481-30205622)
chr5 (19-104)||(30714423-30714508)
chr5 (64-163)||(29709943-29710042)
chr5 (62-164)||(30203119-30203221)
chr5 (59-147)||(30429934-30430022)
chr5 (59-147)||(30522660-30522748)
chr5 (59-147)||(30563000-30563088)
[»] chr4 (2 HSPs)
chr4 (19-245)||(20297592-20297818)
chr4 (59-147)||(52350946-52351034)
[»] chr7 (1 HSPs)
chr7 (25-248)||(26706220-26706440)
[»] chr1 (2 HSPs)
chr1 (20-103)||(7582718-7582801)
chr1 (21-147)||(7098401-7098527)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 30339514 - 30339740
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||||| ||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||||||  |||  | |||||    
T  30339514 gggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtcttccatctcttaaagacctctatgttgagggatg 30339613  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||   |||||||||||| ||||||| ||||    
T  30339614 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatgaaggtgaagg---aataacatccttcccagaggggatg 30339710  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| ||||||||||||||||||||||    
T  30339711 ttcaaaaaccttacttctcttcaatctctg 30339740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 30434936 - 30434714
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    |||||||||||||||||||||||| ||||   |||    | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  30434936 gggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtcttccatctcttaaagacctcggtgtcgatggacg 30434837  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||   |||||||||   ||||||||||||||||||||||||    
T  30434836 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaagga---ataacatccttaccagaggagatg 30434740  T
Q  219 ttcaaaacccttacttctcttcaatc 244  Q
    ||||||| ||||||||||||||||||    
T  30434739 ttcaaaaaccttacttctcttcaatc 30434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 30748757 - 30748531
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||||| |||   |||   ||||||||| ||||||||||||||||||||||||||||||||  ||||  | |    | |||    
T  30748757 gggagatgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatgtcttccatctcttaaatccctccatttatgggaatg 30748658  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||   |||||||||   ||||||||||||||||||||||||    
T  30748657 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaagga---ataacatccttaccagaggagatg 30748561  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| ||||||||||||||||||||||    
T  30748560 ttcaaaaaccttacttctcttcaatctctg 30748531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 29871300 - 29871074
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    |||||||||||||||||||||||| ||||   ||     | ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||  |||    
T  29871300 gggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaattggactgccatgtcttccatctcttaaagacctcgttgccgatccatg 29871201  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| | |||  ||||  |||||||||||||   ||||||||||| ||||||| ||||    
T  29871200 taacaatgagttactgaggtcaatctctaccttttgtggtcttactcagcttgccctaagtgacggtgaagga---ataacatccttcccagaggggatg 29871104  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| |||||||||||||| |||||||    
T  29871103 ttcaaaaaccttacttctcttctatctctg 29871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 30243361 - 30243587
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    |||||||||||||||||||||||| ||||   |||    | ||||||||||||||||||||||||||||||||||||||||||||| ||||    | |||    
T  30243361 gggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtcttccatctcttaaagacctctttgtatgggaatg 30243460  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||  | |||||   ||   |||||||||||| ||||||| ||||    
T  30243461 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaaactaattcacggtttcgg---aataacatccttcccagaggggatg 30243557  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| ||||||||||||||||||||||    
T  30243558 ttcaaaaaccttacttctcttcaatctctg 30243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 30399179 - 30398957
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||| | |||  |||||  | |||||||||||||||| |||||||||||||||||||||||  ||||  |||    |||||    
T  30399179 gggagatgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttccatctcttaaatccctctatgtattgggatg 30399080  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| || |||||  |||   |||||||||||| ||||||| ||||    
T  30399079 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagagg---aataacatccttcccagaggggatg 30398983  T
Q  219 ttcaaaacccttacttctcttcaatc 244  Q
    ||||||| ||||||||||||||||||    
T  30398982 ttcaaaaaccttacttctcttcaatc 30398957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 30482518 - 30482292
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||| | |||  ||||    |||||| ||||||||||||||||| ||||||||||||| ||| ||||  |||  |||||||    
T  30482518 gggagatgtttccttgtctttcttacttggaaatctcatattgccataaacttggactgccatctcttccatctcttgaaggcctctatgtggatggatg 30482419  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||   || |||||||||   ||||||||||| ||||||| ||||    
T  30482418 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaatggagggtgaagga---ataacatccttcccagaggggatg 30482322  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| |||||||| |||||||| ||||    
T  30482321 ttcaaaaaccttacttgtcttcaatatctg 30482292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 30059471 - 30059245
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||||| |||   |||   || |||| ||||||||||||||||||||||||||||||||||  ||||  |||    | |||    
T  30059471 gggagatgtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgtcttccatctcttaaatccctcactgtatcggaatg 30059372  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||  | || |||  ||||||||   |||||||||||| ||||||| ||||    
T  30059371 taacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatgggggtgaagg---aataacatccttcccagaggggatg 30059275  T
Q  219 ttcaaaacccttacttctcttcaatctctg 248  Q
    ||||||| ||||||||||||||||||||||    
T  30059274 ttcaaaaaccttacttctcttcaatctctg 30059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 30678157 - 30678386
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaact---tggactgccatgtcttccatctcttaaagacctcgttgtcaatgg 115  Q
    ||||||||||||||||||||||||  |||   |||    |||||||||||||   |||||||||||||||||||||||||||||| ||||   |    ||    
T  30678157 gggagatgtttccttgtctttctaggttggatatctggaattgccctaaactgcttggactgccatgtcttccatctcttaaagaactcgagatatgggg 30678256  T
Q  116 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||||||| |||||   ||   |||||||||||| ||||||| |    
T  30678257 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagctttccctatataacggtttcgg---aataacatccttcccagagggg 30678353  T
Q  216 atgttcaaaacccttacttctcttcaatctctg 248  Q
    |||||||||| ||||||||||||||||||||||    
T  30678354 atgttcaaaaaccttacttctcttcaatctctg 30678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 29852410 - 29852187
Alignment:
Q  22 agatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaa 121  Q
    |||| |||||||||||||||||||||  ||||    |||||||| |||||||||||||||||||||||||||| |||   |||  |||    ||||||||    
T  29852410 agatatttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttccatctctgaaactgctccatgtattgggatgtaa 29852311  T
Q  122 caatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatgttc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||   ||| ||||||||      | |||||||||||| |||||||||||||||    
T  29852310 caatgagttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggt---ttcagaataacatccttcccagaggagatgttc 29852214  T
Q  222 aaaacccttacttctcttcaatctctg 248  Q
    |||| ||||||||||||||||||||||    
T  29852213 aaaaaccttacttctcttcaatctctg 29852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4380772 - 4380630
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||| ||||||||||||||||||| |||   |||    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||  | |||||    
T  4380772 gggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcatccatctcttaaacacctcgttgttgagggatg 4380673  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtctt 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4380672 taacaatgagttactgaggtcaatctctacctttcgtggtctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 30474473 - 30474363
Alignment:
Q  35 tctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactg 134  Q
    ||||||||||||| | || || ||||||||||||||||   ||||||| |||||||| |||||||||||| ||||   ||||||||||||||||||||||    
T  30474473 tctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaacaatgagttactg 30474374  T
Q  135 aggtcaatctc 145  Q
    || ||||||||    
T  30474373 agatcaatctc 30474363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 30205622 - 30205481
Alignment:
Q  21 gagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgta 120  Q
    |||||||||||||||||||||  |||  | |||  |  ||||||||||||||||||||||||||||  |||||||||| |||| | |||    |||||||    
T  30205622 gagatgtttccttgtctttctcgtttaaccatctccttttgccctaaacttggactgccatgtcttgtatctcttaaaaacctagatgtattgggatgta 30205523  T
Q  121 acaatgagttactgaggtcaatctctaccttccgtggtctta 162  Q
    |||||||||| |||||||||||||||| |||  |||||||||    
T  30205522 acaatgagttgctgaggtcaatctctagcttttgtggtctta 30205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30714423 - 30714508
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatc-atcgattgccctaaacttggactgccatgtcttccatctcttaaagacctc 104  Q
    ||||||||||||||| ||||||||| |||  |||| || | ||||||||||||||||||||||||||||||||||||||||||||||    
T  30714423 gggagatgtttccttctctttctaaattggtaatcgattg-ttgccctaaacttggactgccatgtcttccatctcttaaagacctc 30714508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 29709943 - 29710042
Alignment:
Q  64 ctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 163  Q
    ||||||||| |||| |||||||||| ||||||| |||||||| |||    ||||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709943 ctaaacttgaactgtcatgtcttccgtctcttatagacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 30203221 - 30203119
Alignment:
Q  62 ccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 161  Q
    ||||||||||  |||| |||||||||||| | ||||| ||||   ||| |||| |||||||||||||||||||||||| ||||||| ||||  |||||||    
T  30203221 ccctaaacttcaactgtcatgtcttccatatgttaaaaacctttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtctt 30203122  T
Q  162 act 164  Q
    |||    
T  30203121 act 30203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 30430022 - 30429934
Alignment:
Q  59 ttgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctcta 147  Q
    ||||| |||||||||  ||||||| ||| ||||| ||||||| ||| ||||  |||||||||||||||||||||||  |||||||||||    
T  30430022 ttgccttaaacttgggttgccatgcctttcatcttttaaagaactcattgtagatggatgtaacaatgagttactggagtcaatctcta 30429934  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 30522660 - 30522748
Alignment:
Q  59 ttgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctcta 147  Q
    |||||||||||||||  |||||   ||| ||||  ||||||| ||| ||||  ||||||||||||||||||| |||  |||||||||||    
T  30522660 ttgccctaaacttgggttgccacacctttcatcgtttaaagaactcattgtagatggatgtaacaatgagttgctggagtcaatctcta 30522748  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 30563000 - 30563088
Alignment:
Q  59 ttgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctcta 147  Q
    |||||||||||||||  |||||   ||| ||||  ||||||| ||| ||||  ||||||||||||||||||| |||  |||||||||||    
T  30563000 ttgccctaaacttgggttgccacacctttcatcgtttaaagaactcattgtagatggatgtaacaatgagttgctggagtcaatctcta 30563088  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 20297592 - 20297818
Alignment:
Q  19 gggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatg 118  Q
    ||||||||||||||||||||||||| |||  ||||  | | ||||||||||||||| |||||||||||||||||||||||  ||||| |||| ||  |||    
T  20297592 gggagatgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttccatctcttaaatccctcgatgtcgatccatg 20297691  T
Q  119 taacaatgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatg 218  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| | |||  ||||  |||| |||||| ||||||||||||||| ||||| | ||||    
T  20297692 taacaatgagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatgggatg 20297791  T
Q  219 ttcaaaacccttacttctcttcaatct 245  Q
    ||||||| |||||||||||||||||||    
T  20297792 ttcaaaaaccttacttctcttcaatct 20297818  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 52351034 - 52350946
Alignment:
Q  59 ttgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaatgagttactgaggtcaatctcta 147  Q
    ||||||||||||||   ||| ||  |||||||| |||||||||||| |||| | ||||||||||| | ||||||| ||| |||| ||||    
T  52351034 ttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtcagttactaaggccaatatcta 52350946  T

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Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 26706440 - 26706220
Alignment:
Q  25 tgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgtaacaa 124  Q
    |||||||||||||||||  |||| ||||   | |||||||||| || |||||||||||||||||||||||||||  ||||  |||    |||||||||||    
T  26706440 tgtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaa 26706341  T
Q  125 tgagttactgaggtcaatctctaccttccgtggtcttactgatcttaacctatatgacggtgaaggaataataacatccttaccagaggagatgttcaaa 224  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||| |||| |||||   |||||||||||| ||||||| ||||||||||    
T  26706340 tgagttactgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaagg---aataacatccttcccagaggggatgttcaaa 26706244  T
Q  225 acccttacttctcttcaatctctg 248  Q
    | ||||||||||||||||||||||    
T  26706243 aaccttacttctcttcaatctctg 26706220  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 7582718 - 7582801
Alignment:
Q  20 ggagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacct 103  Q
    ||||||||||||||||||||||| ||||   |||| | ||||||||||||||| ||| || |||||||||||| ||||||||||    
T  7582718 ggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagacct 7582801  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 7098527 - 7098401
Alignment:
Q  21 gagatgtttccttgtctttctaatttgtcaatcatcgattgccctaaacttggactgccatgtcttccatctcttaaagacctcgttgtcaatggatgta 120  Q
    |||| ||||||||||||||||| ||||  ||||  | ||||||||||||||| ||| || |||||||||||| ||| |||||||  |||  ||| |||||    
T  7098527 gagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgta 7098428  T
Q  121 acaatgagttactgaggtcaatctcta 147  Q
    | ||| || | |||| |||||||||||    
T  7098427 ataataagatgctgaagtcaatctcta 7098401  T

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