View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_23 (Length: 239)
Name: NF11634_low_23
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_23 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 16901 - 16682
Alignment:
| Q |
1 |
actcagacataactaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttggagtctttaa |
100 |
Q |
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| T |
16901 |
actcaaacatagctaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttggagtctttaa |
16802 |
T |
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| Q |
101 |
ttgagtacaatttccactgctatgaagaaaactctaccaatatgctttaaaacaaccaagttacgacaatgggcataatactccaagaaacataactgca |
200 |
Q |
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| T |
16801 |
ttgagtacaatttccactgctatgaagaaaactctaccaatatgctttaaaacaaccaagtcacgacaatgggcataatactccaagaaacataactgca |
16702 |
T |
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| Q |
201 |
attggaatcgaacaccaaac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
16701 |
attggaatcgaacaccaaac |
16682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11177159 - 11177268
Alignment:
| Q |
1 |
actcagacataactaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttggagtctttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11177159 |
actcagacataactaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttgtagtctttaa |
11177258 |
T |
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| Q |
101 |
ttgagtacaa |
110 |
Q |
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| T |
11177259 |
ttgagtacaa |
11177268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 11177266 - 11177302
Alignment:
| Q |
184 |
caagaaacataactgcaattggaatcgaacaccaaac |
220 |
Q |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaac |
11177302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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