View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_24 (Length: 230)
Name: NF11634_low_24
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1807450 - 1807231
Alignment:
| Q |
1 |
agattccggctgtcattatctctggtacaccgaaatcattgtctgataaggccgcggcagcgattgatttcatgggctggacaggcataggcaccccata |
100 |
Q |
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| T |
1807450 |
agattccggctgtcattatctctggtacaccgaaatctttgtctgataaagccgcggcagcgattgatttcatgggctggacaggcataggcaccccata |
1807351 |
T |
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| Q |
101 |
catgacaccagtgatgatgttgtagacacctgtaagattccagacacggattacatgagaaaaagagattatttgtgtgcat-------gcatcatatat |
193 |
Q |
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| T |
1807350 |
catgacaccagtgatgatgttgtagacacctgtaagattccagacacggattacatgagaaaaagagattatttgtgtgcatgcatgatgcatcatatat |
1807251 |
T |
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| Q |
194 |
acatagatactgtatatgaa |
213 |
Q |
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| T |
1807250 |
acatagatactgtatatgaa |
1807231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 1875089 - 1874960
Alignment:
| Q |
2 |
gattccggctgtcattatctctggtacaccgaaatcattgtctgataaggccgcggcagcgattgatttcatgggctggacaggcataggcaccccatac |
101 |
Q |
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| T |
1875089 |
gattccagctgccattatctccggtacaccgaaggtggtgtccgataaggcctcggcggaaattgacttcatgggctggactggcatagggaccccataa |
1874990 |
T |
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| Q |
102 |
atgacaccagtgatgatgttgtagacacct |
131 |
Q |
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| T |
1874989 |
atgacaccagtgagcatgttgcatacacct |
1874960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 25798800 - 25798899
Alignment:
| Q |
39 |
ttgtctgataaggccgcggcagcgattgatttcatgggctggacaggcataggcaccccatacatgacaccagtgatgatgttgtagacacctgtaagat |
138 |
Q |
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| T |
25798800 |
ttgtctgataaggccgaggcggcgattgacttcatgggctggacaggcataggtaccccatagatgataccagttattatgttgtagacacctgtaagat |
25798899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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