View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_25 (Length: 223)
Name: NF11634_low_25
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_25 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 41382090 - 41382286
Alignment:
| Q |
9 |
tcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
108 |
Q |
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| T |
41382090 |
tcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
41382189 |
T |
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| Q |
109 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
205 |
Q |
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| T |
41382190 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
41382286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 7971691 - 7971887
Alignment:
| Q |
9 |
tcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
108 |
Q |
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| T |
7971691 |
tcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtac |
7971790 |
T |
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| Q |
109 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
205 |
Q |
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| T |
7971791 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaacc |
7971887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 8041997 - 8041801
Alignment:
| Q |
9 |
tcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
108 |
Q |
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| T |
8041997 |
tcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtac |
8041898 |
T |
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| Q |
109 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
205 |
Q |
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| T |
8041897 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaacc |
8041801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 8032118 - 8031924
Alignment:
| Q |
9 |
tcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
108 |
Q |
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| T |
8032118 |
tcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgtcgcccccaacttctac |
8032019 |
T |
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| Q |
109 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaa |
203 |
Q |
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| T |
8032018 |
tataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgttttcccggaa |
8031924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 7979303 - 7979455
Alignment:
| Q |
53 |
ttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcac |
152 |
Q |
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| T |
7979303 |
ttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcc |
7979402 |
T |
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| Q |
153 |
caaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
205 |
Q |
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| T |
7979403 |
caaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaacc |
7979455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 3214 - 3410
Alignment:
| Q |
9 |
tcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtac |
108 |
Q |
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| T |
3214 |
tcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgttcaccccaacttctac |
3313 |
T |
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| Q |
109 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaacc |
205 |
Q |
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| T |
3314 |
tacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgttttccaggaacc |
3410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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