View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11634_low_5 (Length: 743)

Name: NF11634_low_5
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11634_low_5
NF11634_low_5
[»] chr5 (1 HSPs)
chr5 (16-726)||(29131885-29132595)


Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 16 - 726
Target Start/End: Original strand, 29131885 - 29132595
Alignment:
Q  16 agcagagaatcctacaaacatatactcattcagataaggtgacagatccataaactccgagaaaataggcttagtaggataaacatcttgattagcaagt 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29131885 agcagagaatcctacaaacatatactcattcagataaggtgaaagatccataaactccgagaaaataggcttagtaggataaacatcttgattagcaagt 29131984  T
Q  116 cctaaacgaatgtcaattcgtcttcgaggaccatcataatcaatccaagcatggtgaacaaaaccatccttaagagaaactccaatatctgaaacattga 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29131985 cctaaacgaatgtcaattcgtctttgaggaccatcataatcaatccaagcatggtgaacaaaaccatccttaagagaaactccaatatctgaaacattga 29132084  T
Q  216 taattttagtagatactatgctacctaaatttataccaacatggttatcatttggatcaccgaattctggattttctcgtgtatcaaactcaattgcaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29132085 taattttagtagatactatgctacctaaatttataccaacatggttatcatttggatcaccgaattctggattttctcgtgtatcaaactcaattgcaac 29132184  T
Q  316 agctttataatcgctctcgcaagcatcattaagcataccaagccaaggtcctggccttccaacagtgaattcatcaggtacaatgatgaaagtaagtcca 415  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29132185 ggctttataatcgctctcgcaagcatcattaagcataccaagccaaggtcctggccttccaacagtgaattcatcaggtacaatgatgaaagtaagtcca 29132284  T
Q  416 ctaccaccaccataatcacttatatcagaagcagtagttaaattattaagctgaaaagaaaaggtggtttgaaaagaagctggtgttttggtaattggat 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29132285 ctaccaccaccataatcacttatatcagaagcagtagttaaattattaagctgaaaagaaaaggtggtttgaaaagaagctggtgttttggtgattggat 29132384  T
Q  516 ctaacaaacgaattgggaaggaatataaacctctacctgcttgatctcttatatctgtttcttctgattcatttgggatttgaagtgaacccttttcatc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29132385 ctaacaaacgaattgggaaggaatataaacctctacctgcttgatgtcttatatctgtttcttctgattcatttgggatttgaagtgaacccttttcatc 29132484  T
Q  616 tgagaactttgcacttcctagaagcttcacatcatggactaatcttgagttattagtgaagctgaaatcatggaaggagaagtgtttggttacattgatt 715  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29132485 tgagaactttgcacttcctagaagcttcacatcatggactaatcttgagttattagtgaagctgaaatcatggaaggaaaagtgtttggttacattgatt 29132584  T
Q  716 gaagaagcatt 726  Q
    |||||||||||    
T  29132585 gaagaagcatt 29132595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University