View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_6 (Length: 663)
Name: NF11634_low_6
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 40651873 - 40652522
Alignment:
| Q |
18 |
gtattcaaaaggaaggggattcaattgtagatatcttgtttgaataaaatgtttcggttggatttctctaatagtgggtaaaggtcatatttcaagagta |
117 |
Q |
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| T |
40651873 |
gtattcaaaaggaaggggattcaattgtagatatcctgtttgaataaaatgtttcggttggatttctctaatagtgggtaaaggtcatatctcaagagta |
40651972 |
T |
|
| Q |
118 |
gaatttcaatacttgaatatgattaatcgttcgtaatccagaactttaatcatcaatcagttcataaaatacataataaactctaaccaggttaggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40651973 |
gaatttcaatacttgaatatgattaatcgttcataatccagaactttaatcatcaatcagttcataaaatacataataaactctaaccaggttaggaaaa |
40652072 |
T |
|
| Q |
218 |
taaggcagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatgcattatcatgcagtaccaagtggtacatatggaa |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40652073 |
taagacagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatacattatcatgcagtaccaagtggtacatatggaa |
40652172 |
T |
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| Q |
318 |
caaacttataaccaaatttcaacattac--------attactcacaaaatagacggcacactcctatacgttgtctgaagctgcaaaaaagacatatata |
409 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
40652173 |
caaacttataaccaaatttcaacattacatcattagattactcacaaaatagacggcacactcctatacgctgtctgaagctgcaaaaaagacatatgta |
40652272 |
T |
|
| Q |
410 |
atataactgattgattaactatccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaa |
509 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652273 |
atgtaactgattgattaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaa |
40652372 |
T |
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| Q |
510 |
atgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaac |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40652373 |
atgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacactggcttgcggcatgacacaac |
40652472 |
T |
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| Q |
610 |
atctccacccaaacatgacttatcatttcccatttcatctctctcgacca |
659 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
40652473 |
atctccacccaaacatgacttatcatttcccatttcctttctttcgacca |
40652522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 433 - 645
Target Start/End: Original strand, 40643626 - 40643838
Alignment:
| Q |
433 |
caccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacat |
532 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
40643626 |
caccaaacactttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacat |
40643725 |
T |
|
| Q |
533 |
gggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttat |
632 |
Q |
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||||||||||||||||||| ||| | |||||| ||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
40643726 |
gggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgctgcatgacacagcatctccacccaaacatgacttat |
40643825 |
T |
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| Q |
633 |
catttcccatttc |
645 |
Q |
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| T |
40643826 |
catttcccatttc |
40643838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 438 - 645
Target Start/End: Original strand, 40642441 - 40642648
Alignment:
| Q |
438 |
aacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacatgggta |
537 |
Q |
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|||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40642441 |
aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta |
40642540 |
T |
|
| Q |
538 |
agcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttatcattt |
637 |
Q |
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|| ||||| ||||| ||| | || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
40642541 |
agaaactcgccaccctggctaagctgcttagcatgatgaagtcctctacattggctagctgcatgacacaacatctccacccaaacatgacttatcattt |
40642640 |
T |
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| Q |
638 |
cccatttc |
645 |
Q |
| |
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|||||||| |
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| T |
40642641 |
cccatttc |
40642648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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