View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_8 (Length: 579)
Name: NF11634_low_8
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 3932478 - 3933039
Alignment:
| Q |
1 |
ggttgaggagttcaaggttggagattgggttcgtgttcgtccaacccttacaacttcaaagcatggattaggaaatgtggtaccgggaaccattggcatt |
100 |
Q |
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| T |
3932478 |
ggttgaggagttcaaggttggagattgggttcgtgttcgtccaacccttacaacttcaaagcatggattaggaaatgtggtaccaggaaccattggcatt |
3932577 |
T |
|
| Q |
101 |
gtatattgtatccgacctgacagtagtttgttagtcgagttgagctatgttcaaaatccatggcattgtgaaccagaggagattgagcatgttcctcctt |
200 |
Q |
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| T |
3932578 |
gtatattgtatccgacctgacagtagtttgttagtcgagttgagctatgttcaaaatccatggcattgtgaaccagaggagattgagcatgttcctcctt |
3932677 |
T |
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| Q |
201 |
ttagggtaagaggaatgtagattattttaattctctgacttaatatttttgtcctatttttgttacatgatttgtatttgtcttacagattggtgatagg |
300 |
Q |
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| T |
3932678 |
ttagggtaagaggaatgtagattattttaattctctgacttaatatttttgtcctatttttgttacatgatttgtatttgtcttacagattggtgatagg |
3932777 |
T |
|
| Q |
301 |
gtatgtgtgaagcgatctgttgcagaacctagatatgcttggggtggtgagacacatcacagtgttggaagaataagtgagattgagaatgatggtctct |
400 |
Q |
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| T |
3932778 |
gtatgtgtgaagcgatctgtcgcagaacctagatatgcttggggtggtgagacacatcacagtgttggaagaataagtgagattgagaatgatggtctct |
3932877 |
T |
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| Q |
401 |
taataatagaaataccaaatcgacccataccatggcaagctgatccatctgatatggagaaggtggaagattttaaggtgacaattcttttggttgatgt |
500 |
Q |
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| T |
3932878 |
taataatagaaataccaaatcgacccataccatggcaagctgatccatctgatatggagaaggtggaagattttaaggtgacaattcttttggttgatgt |
3932977 |
T |
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| Q |
501 |
tgatcatttgcttccattttaagtttgttaccttgtacttactgggtaatgccttattattg |
562 |
Q |
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| T |
3932978 |
tgatcatttgcttccattttaagtttgttaccttgtacttactgcgtaatgccttattattg |
3933039 |
T |
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