View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11634_low_9 (Length: 529)
Name: NF11634_low_9
Description: NF11634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11634_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 1624538 - 1624165
Alignment:
| Q |
18 |
tatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
117 |
Q |
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|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624538 |
tatatatagtcatactaatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
1624439 |
T |
|
| Q |
118 |
tgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
217 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624438 |
tgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
1624339 |
T |
|
| Q |
218 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624338 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
1624239 |
T |
|
| Q |
318 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1624238 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagc |
1624165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 1630514 - 1630130
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
116 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1630514 |
atatatatagtcatactaatcaaaaattttggattcgtcacttgcagaaacagaagaagggtcattttcaaattggttttctgtgcatgaaaggaagctt |
1630415 |
T |
|
| Q |
117 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630414 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
1630315 |
T |
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| Q |
217 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630314 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
1630215 |
T |
|
| Q |
317 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagctggttagtta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| |
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|
| T |
1630214 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagtta |
1630130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 1607518 - 1607144
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
116 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607518 |
atatatatagtcatactaatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagctt |
1607419 |
T |
|
| Q |
117 |
ttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaaga |
216 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1607418 |
ttgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaggctgctttaaatgctgctgctaaga |
1607319 |
T |
|
| Q |
217 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607318 |
gaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtga |
1607219 |
T |
|
| Q |
317 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1607218 |
tgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagc |
1607144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 10819760 - 10820149
Alignment:
| Q |
17 |
atatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaa------gaagggtcatttccaaattggttttctgtgcatgaaagg |
110 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
10819760 |
atatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaacagaaatagaagaagggtcacttccaaattggttttctgtgcatgaaagg |
10819858 |
T |
|
| Q |
111 |
aagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctg |
210 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10819859 |
aagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctg |
10819958 |
T |
|
| Q |
211 |
ctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggt |
310 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| |
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|
| T |
10819959 |
ctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattgaggttgctgttcataatgataacattatgttggt |
10820058 |
T |
|
| Q |
311 |
tggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggaggttttaccacttatagctctgcaacagctggttagtta |
401 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
10820059 |
cggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagtta |
10820149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 54 - 391
Target Start/End: Complemental strand, 18785528 - 18785191
Alignment:
| Q |
54 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
|
| Q |
154 |
tggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
|
| Q |
254 |
aggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagt |
353 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785328 |
aggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagt |
18785229 |
T |
|
| Q |
354 |
gttcaaggaggttttaccacttatagctctgcaacagc |
391 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18785228 |
gttcaaggtggttttaccacttatagctctgcaacagc |
18785191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 12803590 - 12803497
Alignment:
| Q |
189 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
282 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| |
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|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg |
12803497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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