View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_16 (Length: 514)
Name: NF11635_high_16
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 281 - 503
Target Start/End: Original strand, 32427492 - 32427714
Alignment:
| Q |
281 |
aaagtttaataccttagtgtcaagcatgacggcgcagagaataccggtattttgcatagcggttctaagattatcaagcgtttcctgatgatattcatag |
380 |
Q |
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| T |
32427492 |
aaagtttaataccttagtgtcaagcatgacggcgcagagaataccggtattttgcatagcggttctaagattatcaagcgtttcctgatgatattcatag |
32427591 |
T |
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| Q |
381 |
gaaccatgagagaagttgaaacgagcaacattcatgcctgcttgtagaagcttctccaccattggaacagacctcgatgcaggtcccagcgtgcacacga |
480 |
Q |
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| T |
32427592 |
gaaccatgagagaagttgaaacgagcgacattcatgcctgcttgtagaagcttctccaccattggaacagacctcgatgcaggtcccagcgtgcacacga |
32427691 |
T |
|
| Q |
481 |
tctttgttttgggtttcttctct |
503 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32427692 |
tctttgttttgggtttcttctct |
32427714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32427189 - 32427438
Alignment:
| Q |
1 |
actacaacaccacaacagatgctattatttgacaacactgatacatattatatatacattaccgttaactcta----------------tcacttcaaat |
84 |
Q |
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| T |
32427189 |
actacaacaccacaatagatgctattatttgacaacactgatacatattatatatacattaccgttaactctatgacttcaaatttctatcacttcaaat |
32427288 |
T |
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| Q |
85 |
ttctggatccgtcattatgtattataatggaaagataaacataaatgagagatctagtaatatttaggtttgatcttacatgtaaacgatcaaatgcaca |
184 |
Q |
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| T |
32427289 |
ttctggatccgtcattatgtattataatggaaagataaacataaatgagagatctagtaatatttaggtttgatc-tacatgtaaacgatcaaatgcaca |
32427387 |
T |
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| Q |
185 |
ttaaatcacgcattaatcacacgtaagatgcaaattctataccatcctatc |
235 |
Q |
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| T |
32427388 |
ttaaatcacgcattaatcacacgtaagatgcaaattctataccatcctatc |
32427438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 284 - 503
Target Start/End: Original strand, 32421658 - 32421877
Alignment:
| Q |
284 |
gtttaataccttagtgtcaagcatgacggcgcagagaataccggtattttgcatagcggttctaagattatcaagcgtttcctgatgatattcataggaa |
383 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| | ||||||||||||||| |||||||||||||| |||| ||| |
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| T |
32421658 |
gtttaataccttagtatcaagcatgacggcgcagagaattccggtattctccatagcagctctaagattatcaagagtttcctgatgatagtcatgagaa |
32421757 |
T |
|
| Q |
384 |
ccatgagagaagttgaaacgagcaacattcatgcctgcttgtagaagcttctccaccattggaacagacctcgatgcaggtcccagcgtgcacacgatct |
483 |
Q |
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| T |
32421758 |
ccatgagagaagttgaatctggcaacgttcatacctgctcgcaaaagcttctcgaccatgggaacagacctagatgcgggtcccagcgtgcaaacgatct |
32421857 |
T |
|
| Q |
484 |
ttgttttgggtttcttctct |
503 |
Q |
| |
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| |||||||| ||||||||| |
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| T |
32421858 |
tagttttgggcttcttctct |
32421877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 284 - 503
Target Start/End: Original strand, 40598863 - 40599082
Alignment:
| Q |
284 |
gtttaataccttagtgtcaagcatgacggcgcagagaataccggtattttgcatagcggttctaagattatcaagcgtttcctgatgatattcataggaa |
383 |
Q |
| |
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|||| |||||||||| ||||||||||||||||| |||||||| ||||| | ||| |||| ||||||||||||||| |||||||||||||| |||| ||| |
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| T |
40598863 |
gttttataccttagtatcaagcatgacggcgcaaagaataccagtattctccatggcggctctaagattatcaagagtttcctgatgatagtcatgagaa |
40598962 |
T |
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| Q |
384 |
ccatgagagaagttgaaacgagcaacattcatgcctgcttgtagaagcttctccaccattggaacagacctcgatgcaggtcccagcgtgcacacgatct |
483 |
Q |
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| T |
40598963 |
ccgtgagagaagttgaatctggcaacgttcatacctgctcgcaaaagcttctcgaccatgggaatagacctagatgcgggtcccagcgtgcaaacgatct |
40599062 |
T |
|
| Q |
484 |
ttgttttgggtttcttctct |
503 |
Q |
| |
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| ||||| |||||||||||| |
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| T |
40599063 |
tagttttcggtttcttctct |
40599082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 69980 - 69835
Alignment:
| Q |
291 |
accttagtgtcaagcatgacggcgcagagaataccggtattttgcatagcggttctaagattatcaagcgtttcctgatgatattcataggaaccatgag |
390 |
Q |
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||||| ||||| |||||||| |||||||||||||| ||| |||||||| | | ||||||||||| |||||||||||||||| || | |||||| | |
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| T |
69980 |
accttggtgtcgagcatgacagcgcagagaataccagtagagtgcatagcagacttgagattatcaagggtttcctgatgatattgatgagtaccatgtg |
69881 |
T |
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| Q |
391 |
agaagttgaaacgagcaacattcatgcctgcttgtagaagcttctc |
436 |
Q |
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|||| |||||||||||||||||||| || |||| ||||||||||| |
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| T |
69880 |
agaaattgaaacgagcaacattcataccagctttaagaagcttctc |
69835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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