View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_high_21 (Length: 485)
Name: NF11635_high_21
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Original strand, 40570490 - 40570944
Alignment:
| Q |
22 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgtcgccaaaaactaaagttacattaaaataaatattagacagacca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagacagacca |
40570589 |
T |
|
| Q |
122 |
tcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttt-aaattgtattacaaagtagaataaatactaaacaaattcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
40570590 |
tcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttttaaattgcattacaaagtagaataaatactaaacaaatccat |
40570689 |
T |
|
| Q |
221 |
ggatttttgtaacgatgaacctgnnnnnnntagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcatttatacaaaagtt |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570690 |
ggatttttgtaacgatgaacctgaaaaaaatagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcatttatacaaaagtt |
40570789 |
T |
|
| Q |
321 |
gcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaaca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570790 |
gcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaaca |
40570889 |
T |
|
| Q |
421 |
catttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattctt |
475 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570890 |
cctttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattctt |
40570944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 40565790 - 40566230
Alignment:
| Q |
19 |
ttctgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgtcgccaaaaactaaagttacattaaaataaatattagacaga |
118 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
40565790 |
ttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaa |
40565889 |
T |
|
| Q |
119 |
-ccatctt-aatttgatcattcgattccgta--ggaaaaatcagtcattttgatttttctattttaaattgtattacaa--agtagaa-taaatactaaa |
211 |
Q |
| |
|
|| | || ||||||||||||| ||||| || |||||| ||| ||||||||| ||||||||| | || |||||| || | || ||||||||||| |
|
|
| T |
40565890 |
accgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaagg---ttacaaggagaataaataaatactaaa |
40565986 |
T |
|
| Q |
212 |
caaattc-atggatttttgtaacgatgaacctgnnnnnnntagcaaagacatggatgtgcactcaaaacagctgctgctaatggtggtcgctgtcattta |
310 |
Q |
| |
|
|||| || | |||||| | || ||||||||||| |||||||| ||||| ||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
40565987 |
caaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatggtggctgctgtcattta |
40566086 |
T |
|
| Q |
311 |
tacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttct |
410 |
Q |
| |
|
|| ||||| ||| ||||||||| ||||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||||||| || |||||||| |
|
|
| T |
40566087 |
tataaaagctgcaactcaaccgatgtcacttccaaattgcccaacaaaatgtggttccgtcaccattccctttccatttggaaccactaagaattgttcc |
40566186 |
T |
|
| Q |
411 |
ctagacaacacatttctcattgattgcaacaaaacatcttcaac |
454 |
Q |
| |
|
|| ||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
40566187 |
ctcgacaatacctttctcattaattgcaacaaaacatcttcaac |
40566230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 341 - 475
Target Start/End: Original strand, 40577233 - 40577367
Alignment:
| Q |
341 |
accaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaac |
440 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40577233 |
accaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaac |
40577332 |
T |
|
| Q |
441 |
aaaacatcttcaacctcaacagacgtaccattctt |
475 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40577333 |
aaaacatcttcaacctcaacagaggtaccattctt |
40577367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 448
Target Start/End: Original strand, 40595451 - 40595607
Alignment:
| Q |
292 |
tggtggtcgctgtcatttatacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttgg |
391 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||| ||||||||||||| ||| || |||||||||| ||| || |||||||||||||| |
|
|
| T |
40595451 |
tggttgtcgctgtcttttatacaaaagcagcaactcaaccgatgtcactaccaaactgtacagcaaagtgtggttccatcaaaatccccttcccatttgg |
40595550 |
T |
|
| Q |
392 |
aaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatc |
448 |
Q |
| |
|
|| |||||| |||| || ||||||||| | || ||||| |||||||||||||||| |
|
|
| T |
40595551 |
aatcaccaaagattgctccctagacaacgctttcctcatcaattgcaacaaaacatc |
40595607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 393
Target Start/End: Original strand, 40600110 - 40600196
Alignment:
| Q |
307 |
tttatacaaaagttgcgactcaaccggtgtcactaccaaattgtccaacaaagtgtggcaatgtcactattcccttcccatttggaa |
393 |
Q |
| |
|
||||||||||||| || | |||||| ||||||||||||| |||| |||||| ||||| |||||| || ||||| |||||||||| |
|
|
| T |
40600110 |
tttatacaaaagtagcaagtcaacctatgtcactaccaaactgtcaaacaaaatgtggttctgtcaccataccctttccatttggaa |
40600196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 251 - 475
Target Start/End: Original strand, 8490386 - 8490611
Alignment:
| Q |
251 |
tagcaaagacatggatgtgcactcaaaacagctgctgctaatggt-ggtcgctgtcatttatacaaaagttgcgactcaaccggtgtcactaccaaattg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |||||||||||| || |
|
|
| T |
8490386 |
tagcaaagacatggatgtgcactcaaaacagctgctgctaatggttggttgctgtcatttatacaaaagtagggactcaaccggcgtcactaccaaactg |
8490485 |
T |
|
| Q |
350 |
tccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatct |
449 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
8490486 |
tccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtct |
8490585 |
T |
|
| Q |
450 |
tcaacctcaacagacgtaccattctt |
475 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8490586 |
tcaacctcaacagacgtaccattctt |
8490611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 8490288 - 8490373
Alignment:
| Q |
95 |
acattaaaataaatattagacaga-ccatcttaatttgatcattcgattccgtaggaaaaatcagtcattttgatttttctatttt |
179 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
8490288 |
acattataataaataatagacaaaaccatcttaatttgatcattcaattccataggaaaaatcagtcattttgacttttctatttt |
8490373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 8490228 - 8490273
Alignment:
| Q |
65 |
ttgcaatcactgtcgccaaaaactaaagttacattaaaataaatat |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
8490228 |
ttgcaatcactgttgccaaaaactaaagttacattataataaatat |
8490273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 451
Target Start/End: Complemental strand, 2017552 - 2017453
Alignment:
| Q |
352 |
caacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttc |
451 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||| | |||||||| |||||||| |||||| |||| ||||||| |
|
|
| T |
2017552 |
caacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcaccaaagcatcttc |
2017453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University