View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_high_22 (Length: 485)
Name: NF11635_high_22
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_22 |
 | |
|
| [»] scaffold1301 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1301 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Complemental strand, 613 - 169
Alignment:
| Q |
23 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
122 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| | |
|
|
| T |
613 |
acaaacaaacaaagcaagtaatggagagttttgtgtcagaaacagccctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
|
| Q |
123 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
222 |
Q |
| |
|
| ||| |||||||| || ||| ||| ||| | ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
513 |
ggacacctacaggaagacgaatcttgacattccactcttggaaaagctccagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagc |
414 |
T |
|
| Q |
223 |
gtacatgtatggttgaataggctcaaaaatgctgtctcgaatgttaactatttgtttggtgatataaagtatgcgttgcgctgcaaagttgatgcacggt |
322 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
413 |
gtacatgtatggttgaacaggctcaaaaatgctgtctcgaatgttaactatttgtttggttatataaagtatgcgttgcgctgcaaacttgaagcacggt |
314 |
T |
|
| Q |
323 |
atgaaacactactaacttctacttctcaggttctgaaagatctttcttctcaacataggagcgtcattaatataattaaagaattaaaaggcttgagatc |
422 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313 |
atgaaacagtactaacttctacttctcaggttctgaatgatctttcttctcaacataggagcgtcattaatataattaaagaattaaaaggcttgagatc |
214 |
T |
|
| Q |
423 |
aggatgcgtaagtgtttccaattccagcagtgtttggcttaaaac |
467 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
213 |
aggatgtgtaagtgtttccaattccagcagtgttttgcttaaaac |
169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 17310953 - 17311171
Alignment:
| Q |
23 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
122 |
Q |
| |
|
||||||||||||| |||||||| | || |||||| ||||||| |||||||||||| || ||||| | |||||||||||||||||||| | |||||| |
|
|
| T |
17310953 |
acaaacaaacaaagcaagtaatggaaggtattgtgttagaaacactcctctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgt |
17311052 |
T |
|
| Q |
123 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
222 |
Q |
| |
|
| ||||||||||||||| ||||||| | ||| | |||||||| ||| ||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17311053 |
ggacaactacaggaggacgaagcttgatgtttcgctcttggaaaatctcaagacagaactgctcagttttgaagttgtagttaacgatgatgctgttagt |
17311152 |
T |
|
| Q |
223 |
gtacatgtatggttgaata |
241 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
17311153 |
gtcaatgtatggttgaata |
17311171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 17311327 - 17311387
Alignment:
| Q |
385 |
gtcattaatataattaaagaattaaaaggcttgagatcaggatgcgtaagtgtttccaatt |
445 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
17311327 |
gtcattaatttaattaaagaactaaaaggcttgagttcaggatgtgtacgtgtttctaatt |
17311387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University