View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_3 (Length: 725)
Name: NF11635_high_3
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 15 - 706
Target Start/End: Original strand, 29932486 - 29933177
Alignment:
| Q |
15 |
gacatcatatatagagaacatatcatatgagacattatcaaaatacaatactgctagattaacattgaatttcattgatctaatgcttaaatcaaaagtt |
114 |
Q |
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||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29932486 |
gacatcatacatagagaacatatagtatgagacattatcgaaatacaatactgttagatcaacattgaatttcattgatctaatgcttaaatcaaaagtt |
29932585 |
T |
|
| Q |
115 |
tttatcgaatagctcaactcgataaatttgaataaaattactcgatggtctattaaataaattcaaatcaaaatataatataaataagtctatctacaaa |
214 |
Q |
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| T |
29932586 |
tttatcgaatagctcagctcgacaaatttgaataaaattacttgatgctctattgaataaattcaaatcaacatataatataaataagtctatctacaaa |
29932685 |
T |
|
| Q |
215 |
ttttaggttcataagannnnnnnngtgtatgatcattaacataaataaattcaacatttataatgaattattaagcagaataactcagttcagatttact |
314 |
Q |
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| T |
29932686 |
ttttaggttcataagattttttttgtgtatgatcattaacataaataaattcaacatttataatgaattattaagcagaataactcagttcagatttact |
29932785 |
T |
|
| Q |
315 |
tatgcatacattaattttgatacctcctctatatagtatatattcttaccatgaaacagttccatggccactcagttccatcctcccttttaaccttggg |
414 |
Q |
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| T |
29932786 |
tatgcatacattaattttgatacctcctctatatagtatatattcttaccatgaaacagttccatggccactcagttccatcctcccttttaaccttggg |
29932885 |
T |
|
| Q |
415 |
cctagtgattccccagtaactcgaaacgacggtgttgctgtcattactgttcttattctcctctgaatgctgatactttttctctggcagagttgacatc |
514 |
Q |
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| T |
29932886 |
cctagtgattccccagtaactcgaaacgacggtgttgctgtcattactgttcttattctcctctgaatgctgatcctttttctctggcagagttgacatc |
29932985 |
T |
|
| Q |
515 |
ttctgccagtagaagcttccacgagtgccaccgccattctggtgtctcggctgaactatcaccgcagttgagaagctgcagtgatagttgcgactactgt |
614 |
Q |
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| T |
29932986 |
ttctgccagtagaagcttccacgagtgccaccgccattctggtgtctcggctgaactatcaccgcagttgagaagctgcagtgatagttgcgactactgt |
29933085 |
T |
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| Q |
615 |
ggaacagagctcgtgccgttgaccttagtaaagagtttttcatgtagaatgtttttgaatgagttcttggataaaaatagtagctcagaagt |
706 |
Q |
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| T |
29933086 |
ggaacagagctcgtgccgttgaccttagtaaagagtttttcatgtagaatgtttttgaatgagttcttggatgaaaatagtagctcagaagt |
29933177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 355 - 666
Target Start/End: Original strand, 29935527 - 29935841
Alignment:
| Q |
355 |
tattcttaccatgaaacagttccatggccactcagttccatcctcccttttaaccttgggcctagtgattccccagtaactcgaaacgacggtgttgctg |
454 |
Q |
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| T |
29935527 |
tattcttaccatgaagcagttccatggccactcagttccatcttccttaagaaccttaggcctactgataccccagtaactcgaaacgacggcgttgtgg |
29935626 |
T |
|
| Q |
455 |
tcattactgttcttattctcctctgaatgctgatactttttctctggcagagttgacatcttctgccagtagaagcttccacgagtgccaccgccattct |
554 |
Q |
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| T |
29935627 |
ttggcatcttttttgctctcctctgtctgctgatcctttttctctggcaaagttgacatcctctgccagtacaagtttccacaagcaccgccgccatgct |
29935726 |
T |
|
| Q |
555 |
ggt---gtctcggctgaactatcaccgcagttgagaagctgcagtgatagttgcgactactgtggaacagagctcgtgccgttgaccttagtaaagagtt |
651 |
Q |
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| T |
29935727 |
ggtggtgtctcggctgaactatcaccgcagttgagaagctgcggtggtagttcccaccattgcggaacaaagctcgtgcagttgaccttaataaaatgtt |
29935826 |
T |
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| Q |
652 |
tttcatgtagaatgt |
666 |
Q |
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| T |
29935827 |
tctcatgttgaatgt |
29935841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 37468624 - 37468585
Alignment:
| Q |
360 |
ttaccatgaaacagttccatggccactcagttccatcctc |
399 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| |
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| T |
37468624 |
ttaccatgaagcagttccaaggccactcagttccatcctc |
37468585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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