View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_36 (Length: 391)
Name: NF11635_high_36
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 2293853 - 2294148
Alignment:
| Q |
19 |
actttgttgctgttctttctccatttgtgttgttgaacctgtttcagctgcaacaacaataacaataacacttttttctgattgaaaattgaaaacaaga |
118 |
Q |
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| T |
2293853 |
actttgttgcggttctttctccatttgtgttgttgaacctgtttcagctgcaacaacaataaca------cttttttctgattgaaaactgaaaacaaga |
2293946 |
T |
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| Q |
119 |
aaaacaatagtactaaaacagtgcgtaatgtactactgtttagatagatacaaca-----aattaggatatggttctttttctctctcttcttttataaa |
213 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2293947 |
aaaacaatagtacaaaaacagtgcgtaatgtactgctgtttagatagatacaacagatgaaattaggatatggttctttttctctctcttcttttataaa |
2294046 |
T |
|
| Q |
214 |
ttgtcaaaaaatttaatttcgaatctgaggtttgataaacttacttagactgtaaatttgcttcttttcgaaacggtccaattagatatcaccgtttgta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
2294047 |
ttgtcaaaaaatttaatttcgaatctgaggtttgataaacttacttagaccgtaaatttgcttcttttggaaacagaccaattagatatcaccgtttgta |
2294146 |
T |
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