View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_high_38 (Length: 384)

Name: NF11635_high_38
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_high_38
NF11635_high_38
[»] chr1 (21 HSPs)
chr1 (1-368)||(3244826-3245193)
chr1 (224-262)||(35017609-35017647)
chr1 (224-266)||(35925719-35925761)
chr1 (312-358)||(42397695-42397741)
chr1 (224-265)||(3597280-3597321)
chr1 (204-256)||(4202130-4202182)
chr1 (310-366)||(38651499-38651555)
chr1 (203-262)||(44031976-44032036)
chr1 (224-259)||(6262056-6262091)
chr1 (192-266)||(10439715-10439790)
chr1 (333-368)||(52013819-52013854)
chr1 (224-262)||(11695894-11695932)
chr1 (333-363)||(15579410-15579440)
chr1 (333-366)||(15489357-15489390)
chr1 (308-369)||(41638398-41638459)
chr1 (229-266)||(52286707-52286744)
chr1 (309-357)||(1730825-1730873)
chr1 (215-267)||(15579510-15579562)
chr1 (309-369)||(30259576-30259636)
chr1 (224-268)||(36151504-36151548)
chr1 (311-371)||(49557060-49557120)
[»] chr5 (18 HSPs)
chr5 (161-262)||(19177021-19177124)
chr5 (309-367)||(20982224-20982282)
chr5 (313-367)||(26516221-26516275)
chr5 (181-260)||(32172688-32172769)
chr5 (309-357)||(7096216-7096264)
chr5 (203-262)||(41052901-41052961)
chr5 (309-368)||(36539668-36539727)
chr5 (324-366)||(2569806-2569848)
chr5 (308-366)||(29115301-29115359)
chr5 (224-266)||(29590628-29590670)
chr5 (309-367)||(31694441-31694499)
chr5 (313-366)||(13224353-13224406)
chr5 (309-366)||(39257475-39257532)
chr5 (335-371)||(42099975-42100012)
chr5 (197-264)||(2092516-2092584)
chr5 (203-262)||(4619740-4619800)
chr5 (226-262)||(15074750-15074786)
chr5 (314-358)||(29588812-29588856)
[»] chr2 (23 HSPs)
chr2 (192-266)||(1741998-1742073)
chr2 (215-262)||(34652026-34652073)
chr2 (224-262)||(1939331-1939369)
chr2 (224-262)||(10285893-10285931)
chr2 (309-369)||(17952790-17952850)
chr2 (309-369)||(38239640-38239700)
chr2 (311-366)||(18962129-18962184)
chr2 (227-266)||(41042024-41042063)
chr2 (215-262)||(43985242-43985289)
chr2 (227-265)||(32615951-32615989)
chr2 (309-367)||(33197328-33197386)
chr2 (311-365)||(43808501-43808555)
chr2 (215-256)||(10563548-10563589)
chr2 (333-366)||(11393768-11393801)
chr2 (333-366)||(11410429-11410462)
chr2 (309-358)||(25609728-25609777)
chr2 (313-358)||(41039739-41039784)
chr2 (224-261)||(43530110-43530147)
chr2 (224-264)||(787363-787403)
chr2 (309-365)||(31461363-31461419)
chr2 (309-369)||(37053515-37053575)
chr2 (214-246)||(40434970-40435002)
chr2 (310-358)||(44443252-44443300)
[»] chr6 (22 HSPs)
chr6 (309-367)||(2514625-2514683)
chr6 (181-262)||(2455843-2455926)
chr6 (215-262)||(9667975-9668022)
chr6 (224-262)||(8420196-8420234)
chr6 (309-367)||(24774681-24774739)
chr6 (181-262)||(31583712-31583794)
chr6 (316-366)||(31668781-31668831)
chr6 (333-366)||(4247747-4247780)
chr6 (215-262)||(7148699-7148746)
chr6 (311-366)||(32386190-32386245)
chr6 (311-369)||(24332864-24332921)
chr6 (204-261)||(30604930-30604988)
chr6 (224-266)||(34544143-34544185)
chr6 (204-260)||(1810283-1810340)
chr6 (309-366)||(3155100-3155157)
chr6 (215-256)||(4246449-4246490)
chr6 (309-358)||(20671954-20672003)
chr6 (224-288)||(32171382-32171449)
chr6 (317-369)||(33737503-33737556)
chr6 (226-262)||(2160938-2160974)
chr6 (313-365)||(10452453-10452505)
chr6 (215-263)||(27615263-27615311)
[»] chr3 (27 HSPs)
chr3 (309-367)||(44374733-44374791)
chr3 (215-266)||(49465926-49465977)
chr3 (224-266)||(1360525-1360567)
chr3 (309-367)||(41028940-41028998)
chr3 (309-358)||(42039091-42039140)
chr3 (309-360)||(3757978-3758029)
chr3 (203-262)||(37273167-37273227)
chr3 (223-258)||(29427643-29427678)
chr3 (309-368)||(33307669-33307728)
chr3 (224-262)||(20192605-20192643)
chr3 (311-365)||(36189491-36189545)
chr3 (224-262)||(48048981-48049019)
chr3 (309-358)||(20192695-20192744)
chr3 (309-366)||(27792796-27792853)
chr3 (227-264)||(38318991-38319028)
chr3 (214-309)||(237380-237477)
chr3 (309-365)||(905059-905115)
chr3 (309-357)||(1395604-1395652)
chr3 (206-262)||(3044240-3044296)
chr3 (224-256)||(13804816-13804848)
chr3 (335-367)||(28842972-28843004)
chr3 (226-262)||(29771871-29771907)
chr3 (309-369)||(38462202-38462262)
chr3 (312-376)||(39971233-39971297)
chr3 (224-260)||(44374644-44374680)
chr3 (310-369)||(49772758-49772817)
chr3 (311-367)||(51130659-51130715)
[»] chr8 (16 HSPs)
chr8 (151-262)||(6950355-6950468)
chr8 (309-367)||(14482125-14482183)
chr8 (333-365)||(2342478-2342510)
chr8 (224-260)||(12361227-12361263)
chr8 (309-365)||(34770817-34770873)
chr8 (215-262)||(31875585-31875632)
chr8 (224-266)||(25869265-25869307)
chr8 (312-366)||(35298570-35298624)
chr8 (228-266)||(40356954-40356992)
chr8 (224-262)||(42597471-42597509)
chr8 (333-366)||(13652139-13652172)
chr8 (333-366)||(13710782-13710815)
chr8 (333-362)||(40868248-40868277)
chr8 (334-366)||(12972780-12972812)
chr8 (309-361)||(29973010-29973062)
chr8 (313-369)||(35869758-35869814)
[»] chr7 (21 HSPs)
chr7 (310-367)||(5373148-5373205)
chr7 (309-366)||(45593808-45593865)
chr7 (224-266)||(27496406-27496448)
chr7 (224-266)||(27503064-27503106)
chr7 (314-364)||(33894549-33894599)
chr7 (334-369)||(39359954-39359989)
chr7 (224-259)||(45078314-45078349)
chr7 (310-365)||(46213728-46213783)
chr7 (224-266)||(27517855-27517897)
chr7 (309-367)||(31341117-31341175)
chr7 (214-260)||(39771796-39771842)
chr7 (309-367)||(49060463-49060521)
chr7 (316-369)||(3610836-3610889)
chr7 (333-366)||(7244626-7244659)
chr7 (215-256)||(13438649-13438690)
chr7 (215-259)||(3468650-3468694)
chr7 (333-369)||(22388017-22388053)
chr7 (277-358)||(27548195-27548278)
chr7 (224-256)||(29768638-29768670)
chr7 (203-266)||(44615081-44615145)
chr7 (203-262)||(48157097-48157157)
[»] scaffold0590 (1 HSPs)
scaffold0590 (309-365)||(1163-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (309-365)||(2756-2812)
[»] chr4 (20 HSPs)
chr4 (203-254)||(41097233-41097285)
chr4 (309-368)||(54325126-54325185)
chr4 (224-262)||(6987740-6987778)
chr4 (224-266)||(29467623-29467665)
chr4 (309-369)||(25487634-25487694)
chr4 (215-262)||(6466036-6466083)
chr4 (278-365)||(8422895-8422982)
chr4 (309-368)||(47970240-47970299)
chr4 (215-261)||(2996607-2996653)
chr4 (309-366)||(4191663-4191721)
chr4 (224-262)||(11264334-11264372)
chr4 (224-254)||(35726750-35726780)
chr4 (333-366)||(2980584-2980617)
chr4 (309-358)||(51044548-51044597)
chr4 (309-366)||(51555956-51556013)
chr4 (310-358)||(4798649-4798697)
chr4 (335-367)||(15511450-15511482)
chr4 (224-260)||(17223035-17223071)
chr4 (313-369)||(24443959-24444015)
chr4 (335-367)||(30079501-30079533)
[»] scaffold0311 (1 HSPs)
scaffold0311 (214-264)||(10606-10656)
[»] scaffold0024 (1 HSPs)
scaffold0024 (309-367)||(27499-27557)
[»] scaffold0654 (1 HSPs)
scaffold0654 (333-369)||(6750-6786)
[»] scaffold0286 (1 HSPs)
scaffold0286 (226-262)||(16143-16179)
[»] scaffold0014 (1 HSPs)
scaffold0014 (333-369)||(116669-116705)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 3245193 - 3244826
Alignment:
Q  1 tgctctaaactcaaaaccacaagacaagtgtaaagagttttattcaagtacttagatagtatcaaaatatggataatgaggataaattgtagtttagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3245193 tgctctaaactcaaaaccacaagacaagtgtaaagagttttattcaagtacttagatagtatcaaaatatggataatgaggataaattgtagtttagtag 3245094  T
Q  101 tattgtaggctggtatcaccgaaagtgaagaaaatttacttccgacgtttggattgccatatttgagtttatctctttgtataagcacttggagattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3245093 tattgtaggctggtatcaccgaaagtgaagaaaatttacttacgacgtttggattgccatatttgagtttatctctttgtataagcacttggagattatt 3244994  T
Q  201 tcggagagcttattaaacaaccaatgacatgtccataagctattttcaacttatttccataaactcacgacaactaatgaaaacagcttctaacttacat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3244993 tcggagagcttattaaacaaccaatgacatgtccataagctattttcaacttatttccataaactcacgacaactaatgaaaacagcttctaacttgcat 3244894  T
Q  301 caaaataatgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3244893 caaaataatgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 3244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 35017647 - 35017609
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35017647 atgacatgtccataagttattttcaacttatttccataa 35017609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 35925761 - 35925719
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  35925761 atgacatgttcataagctgttttcaacttatttccataaactc 35925719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 42397741 - 42397695
Alignment:
Q  312 ctttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||    
T  42397741 ctttattttatgttttgttacagaaatagcttatacataagcactta 42397695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 3597280 - 3597321
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaact 265  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  3597280 atgacatggccataagctattttcagcttatttccataaact 3597321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 4202130 - 4202182
Alignment:
Q  204 gagagcttattaaacaaccaatgacatgtccataagctattttcaacttattt 256  Q
    |||||||||| ||||| |  ||||||||||||||||||||||||| |||||||    
T  4202130 gagagcttataaaacagcttatgacatgtccataagctattttcagcttattt 4202182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 38651499 - 38651555
Alignment:
Q  310 gactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    ||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||||    
T  38651499 gactttagtttatcttttgttatagaattagcttatacataagcacttacatgataa 38651555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 44031976 - 44032036
Alignment:
Q  203 ggagagcttat-taaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    ||||||||||| ||| || | |||||||||||||||||||||||||| || ||||||||||    
T  44031976 ggagagcttatgtaagcagctaatgacatgtccataagctattttcagctaatttccataa 44032036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 6262091 - 6262056
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttcca 259  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6262091 atgacatgttcataagctattttcaacttatttcca 6262056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 10439790 - 10439715
Alignment:
Q  192 gagattatttcggagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||| ||||| ||||||||||| ||| ||| | ||||||||||||||| ||  ||||| |||||||||||||||||    
T  10439790 gagactatttgggagagcttatgaaaacaaactatgacatgtccataatctgctttcagcttatttccataaactc 10439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 52013854 - 52013819
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataagt 368  Q
    |||||||||||||||||||||| |||||||||||||    
T  52013854 agaaatagcttatacataagcatttacatgataagt 52013819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 11695932 - 11695894
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  11695932 atgacatgtccataagctgttttcaacttattttcataa 11695894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 15579440 - 15579410
Alignment:
Q  333 agaaatagcttatacataagcacttacatga 363  Q
    |||||||||||||||||||||||||||||||    
T  15579440 agaaatagcttatacataagcacttacatga 15579410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 15489390 - 15489357
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  15489390 agaaatagcttatacataagcacttaaatgataa 15489357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 41638398 - 41638459
Alignment:
Q  308 atgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    ||||||||||||||| || ||| | | |||||  ||||||||||||||||| ||||||||||    
T  41638398 atgactttattttatcttgtgttctataaataaattatacataagcacttatatgataagtg 41638459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 52286744 - 52286707
Alignment:
Q  229 atgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||||| | |||||||||||||||||    
T  52286744 atgtccataagctatttttagcttatttccataaactc 52286707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 1730873 - 1730825
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactt 357  Q
    |||||||||||||| ||| ||  || |||||||||||||||||||||||    
T  1730873 tgactttattttatctttggttaaaaaaatagcttatacataagcactt 1730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 15579562 - 15579510
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataaactca 267  Q
    |||||||  |||||||||||||||| | || ||| ||||||||||||||||||    
T  15579562 aaacaacttatgacatgtccataagttgttctcagcttatttccataaactca 15579510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 30259576 - 30259636
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||| ||||||   ||||||||||| | |||||||||||  ||||||||||    
T  30259576 tgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtg 30259636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 36151504 - 36151548
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactcac 268  Q
    ||||||||||||||| || |||||||||||||| ||||| |||||    
T  36151504 atgacatgtccataacctgttttcaacttattttcataagctcac 36151548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 49557120 - 49557060
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtgat 371  Q
    |||||||||||| ||||||   ||||||| ||||||||  |||||||| ||||||||||||    
T  49557120 actttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgat 49557060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 19177124 - 19177021
Alignment:
Q  161 atttgagtttatctctttgtataagcacttgg-agattatttcggagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttcc 258  Q
    ||||| ||||||||||| |||||| ||||||  ||||| |||  ||||||| || ||| ||||| ||||||||||||||||||||||| | |||||||||    
T  19177124 atttgtgtttatctcttggtataaacacttgtcagattgtttgagagagctaatgaaaacaaccgatgacatgtccataagctatttttaccttatttcc 19177025  T
Q  259 ataa 262  Q
    ||||    
T  19177024 ataa 19177021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 20982224 - 20982282
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    ||||||||||||||  |||||   |||||||||||||||||||||||||| ||||||||    
T  20982224 tgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 26516275 - 26516221
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||| ||||||   |||||||||||||||||||||||||| ||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataag 26516221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 32172769 - 32172688
Alignment:
Q  181 ataagcacttg-gagattatttcggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccat 260  Q
    ||||||||||| |||||  ||| |||||||||||  |||||||  ||||||||||||||||| ||||||| |||||||||||    
T  32172769 ataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccat 32172688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 7096216 - 7096264
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactt 357  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||    
T  7096216 tgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 41052961 - 41052901
Alignment:
Q  203 ggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||  |||||||| ||||||||| ||||| ||||||| |||||||||||||||    
T  41052961 ggagagcttatagaaacaacctatgacatgttcataaactatttttaacttatttccataa 41052901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 36539727 - 36539668
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 368  Q
    |||||||||||||| |||||   || |||||||||| ||||||||||||| |||||||||    
T  36539727 tgactttattttatcttttgataaacaaatagcttacacataagcacttatatgataagt 36539668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 2569806 - 2569848
Alignment:
Q  324 ttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||| | |||||||||||||||||||||||||| |||||||    
T  2569806 ttttgttcgagaaatagcttatacataagcacttatatgataa 2569848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 29115301 - 29115359
Alignment:
Q  308 atgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    ||||||||||||||  ||||||   |||||||||||||||||||||||||  |||||||    
T  29115301 atgactttattttaccttttgttgtagaaatagcttatacataagcacttttatgataa 29115359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 29590628 - 29590670
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  29590628 atgacttgtccataagttgttttcaacttatttccataaactc 29590670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 31694499 - 31694441
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||| ||||||||||||   ||| ||||||||| |||||||||||| ||||||||    
T  31694499 tgactttagtttatgttttgttatagacatagcttattcataagcacttatatgataag 31694441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 13224406 - 13224353
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||| ||||||   |||||||||||||||||||||||||  |||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 39257475 - 39257532
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||  ||||||   ||| ||||| ||||||||||||||||||||||||    
T  39257475 tgactttattttaccttttgttatagagatagcatatacataagcacttacatgataa 39257532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 42099975 - 42100012
Alignment:
Q  335 aaatagcttatacataagcactta-catgataagtgat 371  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42099975 aaatagcttatacataagcacttatcatgataagtgat 42100012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 2092516 - 2092584
Alignment:
Q  197 tatttcggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataaac 264  Q
    ||||| |||||||||||| |||||||  ||| |||||||||||| | |||||||||| ||| |||||||    
T  2092516 tatttgggagagcttattgaaacaacttatggcatgtccataagttgttttcaactttttttcataaac 2092584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 4619800 - 4619740
Alignment:
Q  203 ggagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    ||||||||||| ||| |||| |||||||||| ||||||||  ||||| |||||||||||||    
T  4619800 ggagagcttatgaaaacaactaatgacatgttcataagctggtttcaccttatttccataa 4619740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 15074750 - 15074786
Alignment:
Q  226 gacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||| |||||| |||||||||||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataa 15074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 29588856 - 29588812
Alignment:
Q  314 ttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    ||||||||| ||||||   ||||||||||||||||||||||||||    
T  29588856 ttattttatattttgttatagaaatagcttatacataagcactta 29588812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 1741998 - 1742073
Alignment:
Q  192 gagattatttcggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||| ||||| |||||||||||  |||||||  ||||||||| |||||||||| ||||||||||||||||||||||    
T  1741998 gagactatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactc 1742073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 34652026 - 34652073
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataa 34652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 1939331 - 1939369
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1939331 atgacatgtccataagctgttttcaacttatttccataa 1939369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 10285931 - 10285893
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10285931 atgacatgtccataagctgttttcaacttatttccataa 10285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 17952790 - 17952850
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||| ||||||   |||||||||||||| |||||| |||| ||||||||||    
T  17952790 tgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtg 17952850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 38239640 - 38239700
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||| ||||||| ||||||   ||||||||||||||||||| |||||||||||| ||||    
T  38239640 tgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgatgagtg 38239700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 18962129 - 18962184
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||| ||||||   | |||||||| |||||||||||||||||||||||    
T  18962129 actttattttatcttttgttataaaaatagctaatacataagcacttacatgataa 18962184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 41042024 - 41042063
Alignment:
Q  227 acatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  41042024 acatgtccatcagctgttttcaacttatttccataaactc 41042063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 43985289 - 43985242
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  |||||||||||||||||| |||||||||| |||||||||    
T  43985289 aaacaacttatgacatgtccataagcttttttcaacttgtttccataa 43985242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 32615989 - 32615951
Alignment:
Q  227 acatgtccataagctattttcaacttatttccataaact 265  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  32615989 acatgtccataagttgttttcaacttatttccataaact 32615951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 33197328 - 33197386
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||| ||| ||||||   |||||||||||||| ||||||||||| ||||||||    
T  33197328 tgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataag 33197386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 43808555 - 43808501
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    ||||||||||||||||  || || ||||||||||||||||| |||||| ||||||    
T  43808555 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 43808501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 10563548 - 10563589
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttattt 256  Q
    ||||| || ||||||||||||||||||||||||| |||||||    
T  10563548 aaacagcctatgacatgtccataagctattttcagcttattt 10563589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 11393768 - 11393801
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  11393768 agaaatagcttatacataagcacttaaatgataa 11393801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 11410429 - 11410462
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  11410429 agaaatagcttatacataagcacttaaatgataa 11410462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 25609777 - 25609728
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||||||| |||| |   ||||||||||||||||||||||||||    
T  25609777 tgactttattttatcttttcttatagaaatagcttatacataagcactta 25609728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 41039739 - 41039784
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||    
T  41039739 tttattttatcttttgtcacagaaatagcttatacataagcactta 41039784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 43530110 - 43530147
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccata 261  Q
    ||||||||| || |||||||||||||||||||||||||    
T  43530110 atgacatgttcacaagctattttcaacttatttccata 43530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 787403 - 787363
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaac 264  Q
    |||||||||||||||||| |||||| ||||| |||||||||    
T  787403 atgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 31461419 - 31461363
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||| ||||||   |||||||||||||| |||| |||||| ||||||    
T  31461419 tgactttattttatcttttgttatagaaatagcttatatataaccacttatatgata 31461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 37053575 - 37053515
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||| || |||   ||||||||  |||||||||||||||| ||||||||||    
T  37053575 tgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtg 37053515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 40434970 - 40435002
Alignment:
Q  214 taaacaaccaatgacatgtccataagctatttt 246  Q
    ||||||||| |||||||||||||||||||||||    
T  40434970 taaacaacctatgacatgtccataagctatttt 40435002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 44443300 - 44443252
Alignment:
Q  310 gactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||| |||||||| |||||||  | ||||||||||||||||||||||||    
T  44443300 gactatattttatcttttgtaataaaaatagcttatacataagcactta 44443252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 2514683 - 2514625
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| |||| |   |||||||||||||||||||||||||||||||||||    
T  2514683 tgactttattttatcttttattatagaaatagcttatacataagcacttacatgataag 2514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 2455926 - 2455843
Alignment:
Q  181 ataagcacttg-gagattatttcggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    ||||||||||| |||||| ||| | |||||||||  |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  2455926 ataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataa 2455843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 9667975 - 9668022
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataa 9668022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 8420196 - 8420234
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  8420196 atgacatgtccacaagctattttcaacttatttccataa 8420234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 24774739 - 24774681
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| ||||||   |||||||| ||||| ||||||||||||||||||||    
T  24774739 tgactttattttatattttgttatagaaatagtttatatataagcacttacatgataag 24774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 31583794 - 31583712
Alignment:
Q  181 ataagcacttggagattatttcggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||| ||| |||| | ||| |||||||||||| ||||  | ||||||||||||||||| | ||||||||||||||||||||    
T  31583794 ataagccctttgagactgttttggagagcttatttaaaccgctaatgacatgtccataagttgttttcaacttatttccataa 31583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 31668781 - 31668831
Alignment:
Q  316 attttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    ||||||||||||||   |||||||||||||||||||||||||| |||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 4247747 - 4247780
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    ||||||||||||||||||||||||||||||||||    
T  4247747 agaaatagcttatacataagcacttacatgataa 4247780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 7148746 - 7148699
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  ||||| ||||||||||||||||||||||||||| |||||    
T  7148746 aaacaacttatgacttgtccataagctattttcaacttattttcataa 7148699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 32386190 - 32386245
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||| |||| ||   ||||||||||||||||||||||||| |||||||    
T  32386190 actttattttatcttttctaagtgaaatagcttatacataagcacttatatgataa 32386245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 24332921 - 24332864
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||| |||| || |||||||||||||||||||| |||||| | ||||||||    
T  24332921 actttattttatctttttta-aagaaatagcttatacataatcacttataggataagtg 24332864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 30604988 - 30604930
Alignment:
Q  204 gagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttccata 261  Q
    |||||||||||||| ||||| |||| |||| |||||| | |||||||||||||||||||    
T  30604988 gagagcttattaaaacaacctatgaaatgttcataagttcttttcaacttatttccata 30604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 34544143 - 34544185
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||    
T  34544143 atgacatgtccataaactattttcatcttatttctataaactc 34544185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 1810283 - 1810340
Alignment:
Q  204 gagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttccat 260  Q
    |||||||||||||| |||| |||| ||||||||||||||  ||||| |||||||||||    
T  1810283 gagagcttattaaaacaactaatggcatgtccataagctgctttcagcttatttccat 1810340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 3155157 - 3155100
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    ||||||| |||||| ||||||| |||| ||||||||||||||| || ||| |||||||    
T  3155157 tgactttgttttatcttttgtaaaagagatagcttatacataaccatttatatgataa 3155100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 4246490 - 4246449
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttattt 256  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  4246490 aaacaactcatgacatgtccataagctgttttcaacttattt 4246449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 20671954 - 20672003
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||||||| |||||  | ||||||||||||||||||| ||||||    
T  20671954 tgactttattttatcttttgatctagaaatagcttatacataatcactta 20672003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 32171382 - 32171449
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaact---cacgacaactaatgaaaacagct 288  Q
    |||||| ||||| |||||||||||| ||||||||||||| ||   || || |||||||||||||||||    
T  32171382 atgacaagtccagaagctattttcagcttatttccataagctatccaggataactaatgaaaacagct 32171449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 33737556 - 33737503
Alignment:
Q  317 ttttatgttttgtacaagaaatagcttatacataagcactt-acatgataagtg 369  Q
    |||||||||||||   |||||||||| |||||||||||||| ||||||||||||    
T  33737556 ttttatgttttgttacagaaatagctgatacataagcacttaacatgataagtg 33737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 2160938 - 2160974
Alignment:
Q  226 gacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||| | ||||||||||||||||||||    
T  2160938 gacatgtccataagttgttttcaacttatttccataa 2160974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 10452453 - 10452505
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||| ||||||   |||||||||||||||||||||||| | ||||||    
T  10452453 tttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 27615263 - 27615311
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataaa 263  Q
    |||||||  ||||||||| |||||||||||||||| | |||||||||||    
T  27615263 aaacaacttatgacatgttcataagctattttcaagtaatttccataaa 27615311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 44374733 - 44374791
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| ||||||  |||| |||||||||||||||||||||| ||||||||    
T  44374733 tgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataag 44374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 49465926 - 49465977
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  49465926 aaacaacttatgacatgtccatgaactattttcaacttatttccataaactc 49465977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 1360525 - 1360567
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  1360525 atgacatgtccataagctattttcagcttatttccacaaactc 1360567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 41028940 - 41028998
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||| | ||||||   |||||||||||||||||||||||||| ||||||||    
T  41028940 tgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 42039140 - 42039091
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||||||| ||||||   ||||||||||||||||||||||||||    
T  42039140 tgactttattttattttttgttacagaaatagcttatacataagcactta 42039091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 3758029 - 3757978
Alignment:
Q  309 tgactttattttatgttttgt-acaagaaatagcttatacataagcacttaca 360  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  3758029 tgactttattttatattttgttacaa-aaatagcttatacataagcacttaca 3757978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 37273227 - 37273167
Alignment:
Q  203 ggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||  |||||||  |||||||||||||||| | ||||||||||||||||||||    
T  37273227 ggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataa 37273167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 29427643 - 29427678
Alignment:
Q  223 aatgacatgtccataagctattttcaacttatttcc 258  Q
    |||||||||| |||||||||||||||||||||||||    
T  29427643 aatgacatgttcataagctattttcaacttatttcc 29427678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 33307669 - 33307728
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 368  Q
    ||||||||||| || ||||||    ||||||||||||||||||||||||| |||||||||    
T  33307669 tgactttatttcatattttgttactgaaatagcttatacataagcacttatatgataagt 33307728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 20192605 - 20192643
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  20192605 atgacatgtccataagctgttttcaactcatttccataa 20192643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 36189545 - 36189491
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||| |||||||  ||||||||||||||||||  |||||| ||||||    
T  36189545 actttattttatcttttgtaagagaaatagcttatacatactcacttatatgata 36189491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 48048981 - 48049019
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  48048981 atgacatgtccataagctgttttcagcttatttccataa 48049019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 20192695 - 20192744
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||||||| ||||||   | ||||||||||||||||||||||||    
T  20192695 tgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 27792853 - 27792796
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||| ||||||||| ||||||    ||||||||||||||||||||||||| |||||||    
T  27792853 tgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataa 27792796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 38319028 - 38318991
Alignment:
Q  227 acatgtccataagctattttcaacttatttccataaac 264  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  38319028 acatgttcataagctattttcagcttatttccataaac 38318991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 237477 - 237380
Alignment:
Q  214 taaacaaccaatgacatgtccataagctattttcaacttatttccataaactc---acgacaactaatgaaaacagcttctaacttacatcaaaataat 309  Q
    ||||||||| ||| |||||||||||||| |||||| ||||||||| ||| |||   | || |||| ||||||||| ||| |||||||||| || |||||    
T  237477 taaacaacctatg-catgtccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaacttataacttacatgaatataat 237380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 905059 - 905115
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||| ||||||   ||||||||||||||| ||||| |||| ||||||    
T  905059 tgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgata 905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 1395652 - 1395604
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactt 357  Q
    |||||||||||||| ||||||   |||||||||||||||||| ||||||    
T  1395652 tgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 3044240 - 3044296
Alignment:
Q  206 gagcttattaaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||| | |||||||  ||||||||| |||||||| |||||||||||||| |||||    
T  3044240 gagcttctgaaacaacttatgacatgttcataagctgttttcaacttattttcataa 3044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 13804848 - 13804816
Alignment:
Q  224 atgacatgtccataagctattttcaacttattt 256  Q
    |||||||||||||||||| ||||||||||||||    
T  13804848 atgacatgtccataagctgttttcaacttattt 13804816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 367
Target Start/End: Original strand, 28842972 - 28843004
Alignment:
Q  335 aaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||||||||||||| ||||||||    
T  28842972 aaatagcttatacataagcacttatatgataag 28843004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 29771907 - 29771871
Alignment:
Q  226 gacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||| | ||||||||||||||||||||    
T  29771907 gacatgtccataagttgttttcaacttatttccataa 29771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 38462262 - 38462202
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||| |||||    |||||||||||||| |||| |||||| ||||||||||    
T  38462262 tgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtg 38462202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 39971297 - 39971233
Alignment:
Q  312 ctttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtgatgatgt 376  Q
    ||||||||||| ||||||   | || || |||||||||||||||||| |||||||||| ||||||    
T  39971297 ctttattttatcttttgttatataagtaacttatacataagcacttatatgataagtgttgatgt 39971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 44374644 - 44374680
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccat 260  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44374644 atgacatgtacataagctattttcaccttatttccat 44374680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 49772758 - 49772817
Alignment:
Q  310 gactttattttatgttttgt-acaagaaatagcttatacataagcacttacatgataagtg 369  Q
    ||||||||||||| |||| | |||| ||||||||||||||||| |||||| ||||||||||    
T  49772758 gactttattttattttttattacaa-aaatagcttatacataaacacttatatgataagtg 49772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 51130715 - 51130659
Alignment:
Q  311 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||| ||||| ||||||| | |||||| ||||| ||||||||||| |||||||||    
T  51130715 actttactttatcttttgtaaaggaaataacttatgcataagcacttgcatgataag 51130659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 6950468 - 6950355
Alignment:
Q  151 ggattgccatatttgagtttatctctttgtataagcacttg-gagattatttcggagagcttat-taaacaaccaatgacatgtccataagctattttca 248  Q
    |||||| | |||||||||||||||  | | |||| || ||| |||||| ||| ||||||||||| ||||||||| |||||||||| ||||| | ||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttca 6950369  T
Q  249 acttatttccataa 262  Q
     |||||||||||||    
T  6950368 gcttatttccataa 6950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 14482183 - 14482125
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| ||||||   |||||||| ||||||||||||||||| ||||||||    
T  14482183 tgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 2342478 - 2342510
Alignment:
Q  333 agaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||||||||||||||||||||||    
T  2342478 agaaatagcttatacataagcacttacatgata 2342510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 12361263 - 12361227
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccat 260  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12361263 atgacatgtccataagctgttttcaacttatttccat 12361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 34770873 - 34770817
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||| |||||||   ||||||| || |||||||||||||||||||||    
T  34770873 tgactttattttatcttttgtaatggaaatagtttttacataagcacttacatgata 34770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 31875585 - 31875632
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  ||||||||||||||||| ||||||||||||||| |||||    
T  31875585 aaacaacttatgacatgtccataagccattttcaacttattttcataa 31875632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 25869265 - 25869307
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||| | |||||| |||||||||||||||||    
T  25869265 atgacatgtccataagttgttttcagcttatttccataaactc 25869307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 35298570 - 35298624
Alignment:
Q  312 ctttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    ||||||||||| ||||||    ||||||||||||||||||||||||| |||||||    
T  35298570 ctttattttatcttttgttactgaaatagcttatacataagcacttatatgataa 35298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 40356992 - 40356954
Alignment:
Q  228 catgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  40356992 catgtccataagctgttttcaacatatttccataaactc 40356954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 42597509 - 42597471
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  42597509 atgacatgtctataagctgttttcaacttatttccataa 42597471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 13652172 - 13652139
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  13652172 agaaatagcttatacataagcacttagatgataa 13652139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 13710815 - 13710782
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  13710815 agaaatagcttatacataagcacttagatgataa 13710782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 362
Target Start/End: Original strand, 40868248 - 40868277
Alignment:
Q  333 agaaatagcttatacataagcacttacatg 362  Q
    ||||||||||||||||||||||||||||||    
T  40868248 agaaatagcttatacataagcacttacatg 40868277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 12972812 - 12972780
Alignment:
Q  334 gaaatagcttatacataagcacttacatgataa 366  Q
    ||||||||||||||||||||||||| |||||||    
T  12972812 gaaatagcttatacataagcacttatatgataa 12972780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 29973062 - 29973010
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacat 361  Q
    |||||||||||||  || |||  ||||||||||||||| ||||||||||||||    
T  29973062 tgactttattttaccttgtgttaaagaaatagcttatatataagcacttacat 29973010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 35869814 - 35869758
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||| ||||||   |||||| ||||||||||||| ||||| ||||||||||    
T  35869814 tttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtg 35869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 5373205 - 5373148
Alignment:
Q  310 gactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    ||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||    
T  5373205 gactttattttatcttttgttatagaaatagcatatacataagcacttacatgataag 5373148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 45593808 - 45593865
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||    
T  45593808 tgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataa 45593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 27496406 - 27496448
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  27496406 atgacatgtccataagctgttttcagcttatttccataaactc 27496448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 27503064 - 27503106
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  27503064 atgacatgtccataagctgttttcagcttatttccataaactc 27503106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 33894599 - 33894549
Alignment:
Q  314 ttattttatgttttgtacaagaaatagcttatacataagcacttacatgat 364  Q
    ||||||||| ||||||   ||||||||||||||||||||||||||||||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 369
Target Start/End: Complemental strand, 39359989 - 39359954
Alignment:
Q  334 gaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||||| |||||||||||||||||||    
T  39359989 gaaatagcttatacatgagcacttacatgataagtg 39359954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 45078349 - 45078314
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttcca 259  Q
    |||||||||||||||||| |||||||||||||||||    
T  45078349 atgacatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 46213783 - 46213728
Alignment:
Q  310 gactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    ||||||||||||| ||||||   ||||||||||| |||||||||||||| ||||||    
T  46213783 gactttattttatattttgttatagaaatagcttttacataagcacttatatgata 46213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 27517855 - 27517897
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||||  |||||| |||||||||||||||||    
T  27517855 atgacatgtccataagcagttttcagcttatttccataaactc 27517897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 31341175 - 31341117
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| ||||||   | |||||||||||||||||||| ||| ||||||||    
T  31341175 tgactttattttatcttttgttatacaaatagcttatacataagcatttagatgataag 31341117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 39771842 - 39771796
Alignment:
Q  214 taaacaaccaatgacatgtccataagctattttcaacttatttccat 260  Q
    ||||||||  |||| ||||||||||||| ||||||||||||||||||    
T  39771842 taaacaacttatgatatgtccataagctgttttcaacttatttccat 39771796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 49060521 - 49060463
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| ||||||   |||||||||||||||||||  ||||| ||||||||    
T  49060521 tgactttattttattttttgttatagaaatagcttatacataaatacttatatgataag 49060463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 3610836 - 3610889
Alignment:
Q  316 attttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    ||||||| ||||||   |||||||||||||||||||||||||| |||| |||||    
T  3610836 attttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtg 3610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 7244659 - 7244626
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  7244659 agaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 13438649 - 13438690
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttattt 256  Q
    |||||||| ||||||| || ||||||||||||||||||||||    
T  13438649 aaacaacctatgacatatctataagctattttcaacttattt 13438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 3468694 - 3468650
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttcca 259  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||||    
T  3468694 aaacaactaatgacatgtccataagttgtttccaacttatttcca 3468650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 22388017 - 22388053
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataagtg 369  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  22388017 agaaatagcttatccataagcacttaaatgataagtg 22388053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 27548278 - 27548195
Alignment:
Q  277 atgaaaacagcttctaacttacatcaaaataat--gactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    ||||||||||||| || |||| || |||| |||  ||||||||||||| |||||   | ||||||||||||| |||||||||||    
T  27548278 atgaaaacagcttatagcttaaatgaaaacaattagactttattttatcttttgctaaggaaatagcttatagataagcactta 27548195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 29768638 - 29768670
Alignment:
Q  224 atgacatgtccataagctattttcaacttattt 256  Q
    |||||||||| ||||||||||||||||||||||    
T  29768638 atgacatgtctataagctattttcaacttattt 29768670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 44615081 - 44615145
Alignment:
Q  203 ggagagcttattaaa-caaccaatgacatgtccataagctattttcaacttatttccataaactc 266  Q
    ||||||||||| ||| ||||  |||||||||||| ||||| ||||||  ||||||||||||||||    
T  44615081 ggagagcttatgaaaacaacttatgacatgtccacaagctgttttcacgttatttccataaactc 44615145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 48157097 - 48157157
Alignment:
Q  203 ggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||  |||||||  ||| |||||||||||||| |||||| |||||||||||||    
T  48157097 ggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataa 48157157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 1163 - 1219
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||| ||||||    
T  1163 tgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 2812 - 2756
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||| ||||||    
T  2812 tgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 41097233 - 41097285
Alignment:
Q  203 ggagagcttatt-aaacaaccaatgacatgtccataagctattttcaacttat 254  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  41097233 ggagagcttatagaaacaactaatgacatgtccataagctattttcaacttat 41097285  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 54325126 - 54325185
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 368  Q
    |||||||||||||| |||||||  |||||||| ||||||| ||||||||| |||||||||    
T  54325126 tgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataagt 54325185  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 6987740 - 6987778
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6987740 atgacatgtccataaactattttcaacttatttccataa 6987778  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 29467623 - 29467665
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataaactc 266  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  29467623 atgacatgtccataagctgttttcagcttatttccataaactc 29467665  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 25487634 - 25487694
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||||||| ||||||   |||||||||||||||||||||| ||| | ||||||||    
T  25487634 tgactttattttattttttgttatagaaatagcttatacataagcatttaaaggataagtg 25487694  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 6466036 - 6466083
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||  |||| |||| |||||||||||||||||||||||||||||    
T  6466036 aaacaacttatgagatgttcataagctattttcaacttatttccataa 6466083  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 8422895 - 8422982
Alignment:
Q  278 tgaaaacagcttctaacttacatcaaaataatgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 365  Q
    |||||||| ||| || |||| || |||| |||||||||||||||| |||| |   | ||||||||||||||||||||| || ||||||    
T  8422895 tgaaaacaacttatagcttatatgaaaacaatgactttattttatctttttttataaaaatagcttatacataagcacatatatgata 8422982  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 47970299 - 47970240
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagt 368  Q
    |||||| ||||||| ||||||   |||||||||||||||||||||||||| |||| ||||    
T  47970299 tgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 2996653 - 2996607
Alignment:
Q  215 aaacaaccaatgacatgtccataagctattttcaacttatttccata 261  Q
    |||||||  |||||||||||||||||| |||||||||||||| ||||    
T  2996653 aaacaacttatgacatgtccataagcttttttcaacttattttcata 2996607  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 4191721 - 4191663
Alignment:
Q  309 tgactttatttt-atgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||| || ||||||   |||||||||||||||||||||||||| |||||||    
T  4191721 tgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 11264372 - 11264334
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccataa 262  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  11264372 atgacatgtccataaactgttttcaacttatttccataa 11264334  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 35726750 - 35726780
Alignment:
Q  224 atgacatgtccataagctattttcaacttat 254  Q
    |||||||||||||||||||||||||||||||    
T  35726750 atgacatgtccataagctattttcaacttat 35726780  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 2980584 - 2980617
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||||||||||||||| |||||||    
T  2980584 agaaatagcttatacataagcacttatatgataa 2980617  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 51044548 - 51044597
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    |||||||||||||| ||||||   ||||||||||||||||||| ||||||    
T  51044548 tgactttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 51555956 - 51556013
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataa 366  Q
    |||||||||||||| ||||||   |  ||||||||||||||||||||||| |||||||    
T  51555956 tgactttattttatcttttgttataataatagcttatacataagcacttatatgataa 51556013  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 4798649 - 4798697
Alignment:
Q  310 gactttattttatgttttgtacaagaaatagcttatacataagcactta 358  Q
    ||||||||||||| |||||    ||||||||||||||||||||||||||    
T  4798649 gactttattttatcttttgatatagaaatagcttatacataagcactta 4798697  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 367
Target Start/End: Original strand, 15511450 - 15511482
Alignment:
Q  335 aaatagcttatacataagcacttacatgataag 367  Q
    ||||| |||||||||||||||||||||||||||    
T  15511450 aaataacttatacataagcacttacatgataag 15511482  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 17223035 - 17223071
Alignment:
Q  224 atgacatgtccataagctattttcaacttatttccat 260  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  17223035 atgacatgttcataagctgttttcaacttatttccat 17223071  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 24444015 - 24443959
Alignment:
Q  313 tttattttatgttttgtacaagaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||||| ||||||   |||||| ||||||||||||| ||||| ||||||||||    
T  24444015 tttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtg 24443959  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 367
Target Start/End: Original strand, 30079501 - 30079533
Alignment:
Q  335 aaatagcttatacataagcacttacatgataag 367  Q
    ||||||||||||| |||||||||||||||||||    
T  30079501 aaatagcttatacttaagcacttacatgataag 30079533  T

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Target: scaffold0311 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 10606 - 10656
Alignment:
Q  214 taaacaaccaatgacatgtccataagctattttcaacttatttccataaac 264  Q
    |||||||| ||||||||||||||||| | |||||| |||||||||||||||    
T  10606 taaacaactaatgacatgtccataagttgttttcagcttatttccataaac 10656  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 27557 - 27499
Alignment:
Q  309 tgactttattttatgttttgtacaagaaatagcttatacataagcacttacatgataag 367  Q
    |||||||||||||| || |||   ||||||| |||||||||||||||||||||||||||    
T  27557 tgactttattttatcttctgttatagaaataacttatacataagcacttacatgataag 27499  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 6750 - 6786
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  6750 agaaatagtttatacataagcacttatatgataagtg 6786  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 16179 - 16143
Alignment:
Q  226 gacatgtccataagctattttcaacttatttccataa 262  Q
    |||||||||||||| | ||||||||||||||||||||    
T  16179 gacatgtccataagttgttttcaacttatttccataa 16143  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 116669 - 116705
Alignment:
Q  333 agaaatagcttatacataagcacttacatgataagtg 369  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  116669 agaaatagtttatacataagcacttatatgataagtg 116705  T

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