View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_high_4 (Length: 705)
Name: NF11635_high_4
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 695
Target Start/End: Original strand, 27079193 - 27079870
Alignment:
| Q |
18 |
tcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagatt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
27079193 |
tcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataaggaaacaaactttggtgacatgacacagatt |
27079292 |
T |
|
| Q |
118 |
cagtaactttacccccattgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27079293 |
cagtaactttacccccattgatccctttaacccttccaaccatgacatttttgcccgatccatttacactctcagttgatcgaacagttacatcatggcc |
27079392 |
T |
|
| Q |
218 |
caaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagtcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
27079393 |
caaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcacactcacccaatgagtcc |
27079492 |
T |
|
| Q |
318 |
actatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtac |
417 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27079493 |
actatcatcttatccatcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtac |
27079592 |
T |
|
| Q |
418 |
gtggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttg |
517 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27079593 |
gtggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttg |
27079692 |
T |
|
| Q |
518 |
aacccannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaa |
617 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27079693 |
aacccatttttttgccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaa |
27079792 |
T |
|
| Q |
618 |
tccttaaacgtgttattaacaccataacctttgaatgttaccttatgatccgcatcagcacctttagcataccctttg |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
27079793 |
tccttaaacgtgttattaacaccataacctttgaatgttatcttatgatccgcatcagcacctttagcataccctttg |
27079870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 21 - 695
Target Start/End: Original strand, 27065479 - 27066153
Alignment:
| Q |
21 |
ggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcag |
120 |
Q |
| |
|
||||| || ||||| |||||||| ||| |||| |||||||||||||| || ||||||| ||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
27065479 |
ggatccaatagatccgcttcatagacatgaacatttggaaccgagtgacagtagtataacaaataaggaaacaaactctggtgacacgatacagattcag |
27065578 |
T |
|
| Q |
121 |
taactttacccccattgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaa |
220 |
Q |
| |
|
||||||| || ||||| ||||| ||||| | || |||||||||| ||||| | ||||||||| ||||||| || |||||||| ||| | ||||| |
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|
| T |
27065579 |
taacttttccaccatttatccccttaactttacccaccatgacatccttgcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaa |
27065678 |
T |
|
| Q |
221 |
aactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagtccact |
320 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| | ||||| |||||||| ||||||| |||| ||||| |
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|
| T |
27065679 |
aacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccacc |
27065778 |
T |
|
| Q |
321 |
atcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtg |
420 |
Q |
| |
|
|||||||||| ||| || |||||||| |||||||| || |||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||| | |
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|
| T |
27065779 |
atcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacgag |
27065878 |
T |
|
| Q |
421 |
gtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaac |
520 |
Q |
| |
|
| |||||||| ||| | |||||||||||| | ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
27065879 |
gcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaac |
27065978 |
T |
|
| Q |
521 |
ccannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatcc |
620 |
Q |
| |
|
| ||||||||| |||| ||||| | ||| || ||||||| || || | ||| |||||| ||||||||||||||||| || || |||||| |
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|
| T |
27065979 |
catgttttttgccaaactaccactatcactgagagagttagttgaagtagtag---ttttattataactagcaaaagaaatacctttcttgtcataatcc |
27066075 |
T |
|
| Q |
621 |
ttaaacgtgttattaacacca---taacctttgaatgttaccttatgatccgcatcagcacctttagcataccctttg |
695 |
Q |
| |
|
||||| || |||||| ||| ||| |||| || | ||||||||||| |||||||||||||||||| |||||| |
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|
| T |
27066076 |
ttaaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttg |
27066153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 177 - 521
Target Start/End: Original strand, 27053193 - 27053537
Alignment:
| Q |
177 |
ccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtct |
276 |
Q |
| |
|
||||||||| ||||||| || ||||| || |||| | ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||| |
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|
| T |
27053193 |
ccatttacattctcagtggaccgaaccgtcacattgctacccaaaatagaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgcttgatct |
27053292 |
T |
|
| Q |
277 |
cacccatgctcggtgccctctcacactcacctaacgagtccactatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcatt |
376 |
Q |
| |
|
|||| | || || || || |||||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||| || |||||||||| | || |
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|
| T |
27053293 |
cacctttacttggcgctctttcacactcactcaatgagtccactatcatcttttccataaaggaattttcagacaccttgaaaacttgcttcatattgtt |
27053392 |
T |
|
| Q |
377 |
caacttagaagatgcaaagggtaatttggtcaaaatggtacgtggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccacc |
476 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |||||| |||||||| || ||||||| |||||| | |||| |||||||||||||| | |
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|
| T |
27053393 |
caacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtggtaacttatcccttgtatctggcataggcataacagtc |
27053492 |
T |
|
| Q |
477 |
ccttgtttcaacatcttttcccggaaaaacttaccaggttgaacc |
521 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||| |||| |||| |
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|
| T |
27053493 |
ccttccttcaacatcctttcgcggaaaaacttacctggttcaacc |
27053537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 14866544 - 14866300
Alignment:
| Q |
36 |
gcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagtaactttacccccat |
135 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||| ||||| || |||||||| || |||||||| || |||||||| ||||| || ||||| || |||| |
|
|
| T |
14866544 |
gcttgataaacccgaaccttaggaaccgagtgacaataataaagcaaatacggaaacaaactctgatgacacgaaacagaccgggtcactttcccgccat |
14866445 |
T |
|
| Q |
136 |
tgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaa |
235 |
Q |
| |
|
| ||||| ||||||| || ||||| |||| || || ||||||||| ||||||| | ||||| |||| || |||||||| ||||||||||| |
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|
| T |
14866444 |
taatcccattaacccgacccaccataacatccttcttcgacccatttacattctcagtagtccgaaccaccacatttcgacccaaaaccgaagttgcaaa |
14866345 |
T |
|
| Q |
236 |
gtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacc |
280 |
Q |
| |
|
||| ||||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
14866344 |
gtcgatcatatcctcaatagacccaacacatctttttgtctcacc |
14866300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 523
Target Start/End: Complemental strand, 14866160 - 14866057
Alignment:
| Q |
420 |
ggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaa |
519 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| |||| ||||||||| || || | |||||||||||||| | || |
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|
| T |
14866160 |
ggtaaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaa |
14866061 |
T |
|
| Q |
520 |
ccca |
523 |
Q |
| |
|
|||| |
|
|
| T |
14866060 |
ccca |
14866057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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