View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_high_42 (Length: 364)

Name: NF11635_high_42
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_high_42
NF11635_high_42
[»] chr6 (47 HSPs)
chr6 (20-163)||(12163884-12164027)
chr6 (20-163)||(12164142-12164285)
chr6 (263-351)||(12164457-12164545)
chr6 (89-163)||(12210741-12210815)
chr6 (23-141)||(12210933-12211051)
chr6 (263-351)||(12212980-12213068)
chr6 (214-273)||(12164336-12164395)
chr6 (89-163)||(12163638-12163712)
chr6 (59-163)||(12163668-12163772)
chr6 (89-163)||(12163290-12163364)
chr6 (215-274)||(12163317-12163376)
chr6 (89-163)||(12163479-12163553)
chr6 (92-163)||(12164313-12164384)
chr6 (100-162)||(12163361-12163423)
chr6 (236-274)||(12210909-12210947)
chr6 (59-159)||(12163509-12163609)
chr6 (215-275)||(12163566-12163626)
chr6 (215-275)||(12163725-12163785)
chr6 (215-274)||(12163665-12163724)
chr6 (215-273)||(12163347-12163405)
chr6 (218-275)||(12163410-12163467)
chr6 (233-274)||(12163554-12163595)
chr6 (236-273)||(12164121-12164158)
chr6 (107-159)||(12179161-12179216)
chr6 (266-351)||(12192533-12192618)
chr6 (215-275)||(12163218-12163278)
chr6 (110-162)||(12163341-12163393)
chr6 (215-275)||(12163980-12164040)
chr6 (215-275)||(12210768-12210828)
chr6 (20-75)||(12210879-12210937)
chr6 (101-156)||(12163203-12163258)
chr6 (215-274)||(12163377-12163436)
chr6 (215-270)||(12163695-12163750)
chr6 (242-273)||(12211119-12211150)
chr6 (239-273)||(12163866-12163900)
chr6 (236-270)||(12179401-12179435)
chr6 (107-141)||(12192329-12192363)
chr6 (236-270)||(12192482-12192516)
chr6 (95-141)||(12210687-12210733)
chr6 (239-273)||(12210861-12210895)
chr6 (20-58)||(12211182-12211220)
chr6 (20-58)||(12212851-12212889)
chr6 (92-141)||(12211098-12211147)
chr6 (70-162)||(12163490-12163582)
chr6 (215-243)||(12164079-12164107)
chr6 (215-275)||(12164238-12164298)
chr6 (107-151)||(12210858-12210902)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 47)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 12163884 - 12164027
Alignment:
Q  20 aagtctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  12163884 aagtctcctcctccacctgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccaccagttt 12163983  T
Q  120 acaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12163984 acaagtacaagtcacctcctcccccagtttacaagtacaaatct 12164027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 12164142 - 12164285
Alignment:
Q  20 aagtctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagttt 119  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  12164142 aagtctcctcctccacccgtcaattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagttt 12164241  T
Q  120 acaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  12164242 acaagtacaaatcacctcctcctccagtttacaagtacaaatct 12164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 12164457 - 12164545
Alignment:
Q  263 cctcctccaccacattacatatattcatcacctcctcctccttaccactcctagataatggtttaccatagtatcccatggtatgcttc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  12164457 cctcctccaccacattacatatattcatcacctcctcctccttaccactcttagataacggtttaccatagtatcccatggtatgcttc 12164545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 12210741 - 12210815
Alignment:
Q  89 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210741 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 12210815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 12210933 - 12211051
Alignment:
Q  23 tctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagtttaca 122  Q
    |||||||||||||| || || |||||||||||||||||||||||   |||||||||||||||||| || |||||| |||| || ||||||||||| ||||    
T  12210933 tctcctcctccaccagtttactcaccacctccaccatacaagtattcatctccaccacctcctccgtacaagtactcatcaccaccaccaccagtctaca 12211032  T
Q  123 agtacaagtcacctcctcc 141  Q
    |||| ||||||||||||||    
T  12211033 agtataagtcacctcctcc 12211051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 12212980 - 12213068
Alignment:
Q  263 cctcctccaccacattacatatattcatcacctcctcctccttaccactcctagataatggtttaccatagtatcccatggtatgcttc 351  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||  ||||||||||||    
T  12212980 cctcctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttc 12213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 12164336 - 12164395
Alignment:
Q  214 cgtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12164336 cgtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 12164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 12163638 - 12163712
Alignment:
Q  89 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  12163638 tataaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttacaagtataaatct 12163712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 12163668 - 12163772
Alignment:
Q  59 tacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtaca 158  Q
    |||||||||||||| || || |||||   ||| |||||   |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12163668 tacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagtataagtcacctcctcccccagtttacaagtaca 12163767  T
Q  159 aatct 163  Q
    |||||    
T  12163768 aatct 12163772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 12163290 - 12163364
Alignment:
Q  89 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  12163290 tataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatct 12163364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 12163317 - 12163376
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacca 274  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  12163317 gtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccacca 12163376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 12163479 - 12163553
Alignment:
Q  89 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| || || || |||||||||||||||    
T  12163479 tataaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatct 12163553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 12164313 - 12164384
Alignment:
Q  92 aagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatct 163  Q
    ||||||||||| || |||||||| |||||||| || ||||| |||||||| |||||||||||||| ||||||    
T  12164313 aagtacccatcaccaccaccacccgtttacaaatataagtcccctcctccaccagtttacaagtataaatct 12164384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 12163361 - 12163423
Alignment:
Q  100 atctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatc 162  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || || |||||||| |||||    
T  12163361 atctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatc 12163423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 12210909 - 12210947
Alignment:
Q  236 cctccaccagtttacaagtataaatctcctcctccacca 274  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12210909 cctccaccagtttacaagtataaatctcctcctccacca 12210947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 12163509 - 12163609
Alignment:
Q  59 tacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtaca 158  Q
    |||||||||||||| || ||||| ||    || ||||||  |||||| |||||||||||||||||||| || || |||||||| ||||| ||||||||||    
T  12163509 tacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagtataaatcccctcctccaccagtgtacaagtaca 12163608  T
Q  159 a 159  Q
    |    
T  12163609 a 12163609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12163566 - 12163626
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| ||||| ||||||||||||||||| |||||||| || |||||||| |||||||    
T  12163566 gtttacaagtataaatcccctcctccaccagtgtacaagtacaagtctcctccaccaccac 12163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12163725 - 12163785
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| |||||||| |||||||| |||||||||||||| |||||||| || |||||||    
T  12163725 gtttacaagtataagtcacctcctcccccagtttacaagtacaaatctccaccaccaccac 12163785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 12163665 - 12163724
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacca 274  Q
    |||||||| || || || |||||||| |||||||||||||||||||||||||| ||||||    
T  12163665 gtttacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccacca 12163724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 12163347 - 12163405
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 273  Q
    |||||||| ||||| || ||||| ||||||||||||||||| ||||| |||||||||||    
T  12163347 gtttacaagtataaatctcctccaccaccagtttacaagtacaaatcacctcctccacc 12163405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 12163410 - 12163467
Alignment:
Q  218 tacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    ||||| ||||| ||||||||||||||||| |||||||| || |||||||| |||||||    
T  12163410 tacaagtataaatcccctcctccaccagtgtacaagtacaagtctcctccaccaccac 12163467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 12163554 - 12163595
Alignment:
Q  233 cctcctccaccagtttacaagtataaatctcctcctccacca 274  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  12163554 cctccaccaccagtttacaagtataaatcccctcctccacca 12163595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 12164121 - 12164158
Alignment:
Q  236 cctccaccagtttacaagtataaatctcctcctccacc 273  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  12164121 cctccaccagtttacaagtataagtctcctcctccacc 12164158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 12179161 - 12179216
Alignment:
Q  107 ccaccaccagtttacaagtacaagt---cacctcctcccccagtttacaagtacaa 159  Q
    |||||||||||||||||||||||||   ||||||| || |||||||||||||||||    
T  12179161 ccaccaccagtttacaagtacaagtccccacctccaccaccagtttacaagtacaa 12179216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 12192533 - 12192618
Alignment:
Q  266 cctccaccacattacatatattcatcacctcctcctccttaccactcctagataatggtttaccatagtatcccatggtatgcttc 351  Q
    |||||||||||||| || || || ||||| |||||||||||||||  ||| ||  |||||||| ||||||||||| ||||| ||||    
T  12192533 cctccaccacattatatctactcttcaccacctcctccttaccaccactaaatggtggtttacgatagtatcccacggtatacttc 12192618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12163218 - 12163278
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| || || || |||||||||||||| || |||||||| ||||||||||||||||    
T  12163218 gtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccaccac 12163278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 12163341 - 12163393
Alignment:
Q  110 ccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatc 162  Q
    ||||||||||||||||| || || ||||| || ||||||||||||||||||||    
T  12163341 ccaccagtttacaagtataaatctcctccaccaccagtttacaagtacaaatc 12163393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12163980 - 12164040
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| || ||||| |||||||| |||||||||||||| |||||||| || |||||||    
T  12163980 gtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccaccaccaccac 12164040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12210768 - 12210828
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| || ||||| |||||||| |||||||||||||| |||||||| || |||||||    
T  12210768 gtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccac 12210828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 12210879 - 12210937
Alignment:
Q  20 aagtctcctcctccacctgtctattcaccacctccacca---tacaagtacaaatctcc 75  Q
    |||||||||||||||||||| || |||||||||||||||   |||||||| ||||||||    
T  12210879 aagtctcctcctccacctgtttactcaccacctccaccagtttacaagtataaatctcc 12210937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 12163203 - 12163258
Alignment:
Q  101 tctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagta 156  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||| || |||||    
T  12163203 tctcctccacctccagtttacaagtacaaatcacctcctccaccagtgtataagta 12163258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 12163377 - 12163436
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacca 274  Q
    |||||||| || || || ||||||||||| || |||||||||||||| ||||||||||||    
T  12163377 gtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccacca 12163436  T

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Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 12163695 - 12163750
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctcc 270  Q
    |||||||| ||||| || ||||| |||||||||||||||||||| || ||||||||    
T  12163695 gtttacaagtataaatctcctccaccaccagtttacaagtataagtcacctcctcc 12163750  T

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Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 12211119 - 12211150
Alignment:
Q  242 ccagtttacaagtataaatctcctcctccacc 273  Q
    ||||||||||||||||||||||||||||||||    
T  12211119 ccagtttacaagtataaatctcctcctccacc 12211150  T

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Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 12163866 - 12163900
Alignment:
Q  239 ccaccagtttacaagtataaatctcctcctccacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  12163866 ccaccagtttacaagtataagtctcctcctccacc 12163900  T

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Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 12179401 - 12179435
Alignment:
Q  236 cctccaccagtttacaagtataaatctcctcctcc 270  Q
    ||||||||||||||||||||||| |||||||||||    
T  12179401 cctccaccagtttacaagtataagtctcctcctcc 12179435  T

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Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 12192329 - 12192363
Alignment:
Q  107 ccaccaccagtttacaagtacaagtcacctcctcc 141  Q
    ||||||||||||||||||||||||||||| |||||    
T  12192329 ccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

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Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 12192482 - 12192516
Alignment:
Q  236 cctccaccagtttacaagtataaatctcctcctcc 270  Q
    ||||||||||||||||||||||| |||||||||||    
T  12192482 cctccaccagtttacaagtataagtctcctcctcc 12192516  T

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Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 12210687 - 12210733
Alignment:
Q  95 tacccatctcccccaccaccagtttacaagtacaagtcacctcctcc 141  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||||||    
T  12210687 tacccttctcctccaccaccagtatacaagtacaaatcacctcctcc 12210733  T

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Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 12210861 - 12210895
Alignment:
Q  239 ccaccagtttacaagtataaatctcctcctccacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  12210861 ccaccagtttacaagtataagtctcctcctccacc 12210895  T

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Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 12211182 - 12211220
Alignment:
Q  20 aagtctcctcctccacctgtctattcaccacctccacca 58  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  12211182 aagtcacctcctccacctgtctactcaccacctccacca 12211220  T

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Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 12212851 - 12212889
Alignment:
Q  20 aagtctcctcctccacctgtctattcaccacctccacca 58  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  12212851 aagtctcctcccccacctgtctactcaccacctccacca 12212889  T

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Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 12211098 - 12211147
Alignment:
Q  92 aagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcc 141  Q
    |||||||||||||| ||||| |||||||||||||| || || ||||||||    
T  12211098 aagtacccatctccaccacccccagtttacaagtataaatctcctcctcc 12211147  T

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Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 12163490 - 12163582
Alignment:
Q  70 atctccaccacctcctccttataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatc 162  Q
    |||||||||||| ||   ||| ||||||  ||| || |||||||| || ||||||||||| || ||||| || |||||||||||||| |||||    
T  12163490 atctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagtataaatc 12163582  T

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Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 12164079 - 12164107
Alignment:
Q  215 gtttacaaatataagtcccctcctccacc 243  Q
    |||||||||||||||||||||||||||||    
T  12164079 gtttacaaatataagtcccctcctccacc 12164107  T

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Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 12164238 - 12164298
Alignment:
Q  215 gtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccaccac 275  Q
    |||||||| || || || |||||||| |||||||||||||| |||||||| || |||||||    
T  12164238 gtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccac 12164298  T

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Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 12210858 - 12210902
Alignment:
Q  107 ccaccaccagtttacaagtacaagtcacctcctcccccagtttac 151  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  12210858 ccaccaccagtttacaagtataagtctcctcctccacctgtttac 12210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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