View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_56 (Length: 313)
Name: NF11635_high_56
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 29901122 - 29900837
Alignment:
| Q |
17 |
cagctgcattagtacatatattttcaaacttcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtct |
116 |
Q |
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| T |
29901122 |
cagctgcattagtacatatattttcaaacttcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtct |
29901023 |
T |
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| Q |
117 |
atacattaaaaacagaaagaagttcatttttccagtaatatacaattggtgaaaccgatcttattgtacaccccttttattctatatccattataatagc |
216 |
Q |
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| T |
29901022 |
atacattaaaaacagaaagaagttcatttttccagtaatatacaattggtgaaaccgatcttattgtacaccccttttattctatatccattataatagc |
29900923 |
T |
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| Q |
217 |
tctttcatattttctcacaattttatctccttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcat |
302 |
Q |
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| T |
29900922 |
tctttcatattttctcacaattttatctccttttcacgtgacattgtgtaatgcatcagcgtaggttaataatttgttagattcat |
29900837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 47 - 302
Target Start/End: Complemental strand, 29886803 - 29886551
Alignment:
| Q |
47 |
tcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtctatacattaaaaacagaaagaagttcatttt |
146 |
Q |
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| T |
29886803 |
tcaaggggaatgaagttcatgtctcacaccaggcgtttgaatgcaattttcattcaatagaatttggtctatgcattaaaaacagaaag---ttcatttt |
29886707 |
T |
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| Q |
147 |
tccagtaatatacaattggtgaaaccgatcttattgtacaccccttttattctatatccattataatagctctttcatattttctcacaattttatctcc |
246 |
Q |
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| T |
29886706 |
tccagtaatatacaattggtgaaaccgatcttattgcacacacattttattttatatcccttataatagctctttcatattttatcacaattttatctcc |
29886607 |
T |
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| Q |
247 |
ttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcat |
302 |
Q |
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| T |
29886606 |
ttttcatgtgacattgtgtaatgcatcaacataggttaataattggatagattcat |
29886551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 29900812 - 29900757
Alignment:
| Q |
247 |
ttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcat |
302 |
Q |
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| T |
29900812 |
ttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcat |
29900757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 29857317 - 29857279
Alignment:
| Q |
259 |
attgtgtaatgcatcaacataggttaataattggataga |
297 |
Q |
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| T |
29857317 |
attgtgtaatgcatcaacaaagcttaataattggataga |
29857279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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