View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_6 (Length: 655)
Name: NF11635_high_6
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 7006917 - 7007257
Alignment:
| Q |
19 |
gtacacactatcaataaactatagaagaagaagaaaaacact--ggcaaatgcacttattttacctccatttttaattcaataatgataatttagactca |
116 |
Q |
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| T |
7006917 |
gtacacactatcaataaactatagaagaagaa---aaacacttgggcaaatgcacttattttacctccatttttaattaaa-aatgataatttagactca |
7007012 |
T |
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| Q |
117 |
aatgaaataaaaccatgaaatgataaattagacactcgtttcaatttaaaatagcttaaacttttgtaattcatgattacattttattctaagcagcttg |
216 |
Q |
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| T |
7007013 |
aatgaaataaaaccatgaaatgataaattagacactcgtttcaatttaaaatagcttaaacttttgtaattcatgattacattttattctaagcagcttg |
7007112 |
T |
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| Q |
217 |
attcatttgcataattgaaattacatcaaaatgttatgaaaataatcccatagtactcttcataatatgcatttgcctcatcaacataggatttctcctc |
316 |
Q |
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| T |
7007113 |
attcatttgcataattgaaattacatcaaaatgttatgaaaataatcccttagtactcttcataatatgcatttgcctcctcaacataggattcctcctc |
7007212 |
T |
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| Q |
317 |
aacctcaagtgcgtactcttcatagtatgcatttgcctcctcaac |
361 |
Q |
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| T |
7007213 |
aacctcaggtgcgtactcttcatagtatgcatttgcctcctcaac |
7007257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 429 - 645
Target Start/End: Original strand, 7007307 - 7007535
Alignment:
| Q |
429 |
gcctcctcaacatgggatgcctcctcaacatgctcatagtaggcatcactctcaacttcatgatggtacacttcatgctcatagtacgaatccttctcca |
528 |
Q |
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| T |
7007307 |
gcctcctcgacatgagatgcctcctcaacatgctcatagtaggcatcactctcaacttcatgatggtacacttcatgctcatagtacgaatccttctcca |
7007406 |
T |
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| Q |
529 |
ctttctcagcttcgttgtccttctctaatgcaagtgcaccaattcca------------cccacagccaaacctgctccagcacccacggccaaacctgt |
616 |
Q |
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| T |
7007407 |
ctttctcagcttcctcatccttccctaatgcaagtgcaccaattccacccacaacaactcccacagccaaacctgctccagcacccacggccaaacctgt |
7007506 |
T |
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| Q |
617 |
tcccaacccaaattggctacctttctctg |
645 |
Q |
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| T |
7007507 |
tcccaacccaaattggctacctttctctg |
7007535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 7007249 - 7007338
Alignment:
| Q |
311 |
ctcctcaacctcaagtgcgtactcttcatagtatgcatttgcctcctcaacattggaggcctcctcgacatgagatgcctcctcaacatg |
400 |
Q |
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| T |
7007249 |
ctcctcaacctcagttgcatactcttcatagtatgcattcgcctcctcaacattggatgcctcctcgacatgagatgcctcctcaacatg |
7007338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 7007165 - 7007212
Alignment:
| Q |
329 |
gtactcttcatagtatgcatttgcctcctcaacattggaggcctcctc |
376 |
Q |
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| T |
7007165 |
gtactcttcataatatgcatttgcctcctcaacataggattcctcctc |
7007212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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