View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_61 (Length: 297)
Name: NF11635_high_61
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_61 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10561920 - 10562194
Alignment:
| Q |
1 |
agccttaccaccacacgcggagaggctgttttagaattcgaacatgtgacacggcaacaaccttaccattgagccaagtcccgccctgtctgtaagagta |
100 |
Q |
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| T |
10561920 |
agccttaccaccacacgtggagaggctgatttagaattcgaacatgtgacacggcaacaatcttaccattgcgccaagtctcgtcctctctgtaagagta |
10562019 |
T |
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| Q |
101 |
taagatacaattgaaaattatattttctttgatttgaaagtgaaatttagagtgaaaacactcacccaaatccaaaagaaaaacgcgatctcaaaagagt |
200 |
Q |
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| T |
10562020 |
gaagatacaattgaaagttatatttcctttgatttgaaaggggagtttagagtgaaaacactcacccaaatccaaaagaaaaacgcgatctcaaaagagt |
10562119 |
T |
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| Q |
201 |
tttgaaacaaagtgaagtgaagtaagtcgaggacaatggccgggcggttaaaccaaaagtattcatctgatggct |
275 |
Q |
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| T |
10562120 |
tctgaaacaaagtgaagtgaagtaagtcgaggacaatggccgggcggttaaaccaaaagtattcatctgatggct |
10562194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 24125464 - 24125407
Alignment:
| Q |
150 |
gagtgaaaacactcacccaaatccaaaagaaaaacgcgatctcaaaagagttttgaaa |
207 |
Q |
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| T |
24125464 |
gagtgaaaacacacacccaaattcagaagaaaaacgtactctcaaaagtgttttgaaa |
24125407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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