View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_high_66 (Length: 275)
Name: NF11635_high_66
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_66 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 39521412 - 39521138
Alignment:
| Q |
1 |
cgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39521412 |
cgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgcta |
39521313 |
T |
|
| Q |
101 |
agaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaac |
200 |
Q |
| |
|
|||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521312 |
agaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaac |
39521213 |
T |
|
| Q |
201 |
tggcaaagagagtattaacggttctagcagcataagttggagggttcctgtagagaagaacgtagatcatttact |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39521212 |
tggcaaagagagtattaacggttctagcaacataagttggagtgttcctgtagagaagaacgtagatcatttact |
39521138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 39576027 - 39575783
Alignment:
| Q |
28 |
gatagaggaaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattc |
127 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
39576027 |
gatagaggaactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattc |
39575928 |
T |
|
| Q |
128 |
cacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctag |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39575927 |
cacgcactgcaaatgatacgtctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctag |
39575828 |
T |
|
| Q |
228 |
cagcataagttggagggttcctgtagagaagaacgtagatcattt |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39575827 |
cagcataagttggagtgttcctgtagagaagaacgtagatcattt |
39575783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 39544188 - 39543997
Alignment:
| Q |
21 |
aactgtcgatagaggaaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggt |
120 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | | |
|
|
| T |
39544188 |
aactgtcgatagaaaaaccgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagat |
39544089 |
T |
|
| Q |
121 |
ggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
212 |
Q |
| |
|
| ||| ||||||||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
39544088 |
gaaattaaacgcactgcaaataatacatatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 272
Target Start/End: Complemental strand, 39524884 - 39524635
Alignment:
| Q |
29 |
atagaggaaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattcc |
128 |
Q |
| |
|
|||||| ||| |||||| |||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| | |||||| |||| |||| |
|
|
| T |
39524884 |
atagagaaactgatacactatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaa |
39524785 |
T |
|
| Q |
129 |
acgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagc |
228 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||||||||| |||| || | |||||| | |||||| |||||| ||||| |||| |||| ||||| | | |
|
|
| T |
39524784 |
acgcactgcaaatgatgaatctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatc |
39524685 |
T |
|
| Q |
229 |
------agcataagttggagggttcctgtagagaagaacgtagatcattt |
272 |
Q |
| |
|
| |||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
39524684 |
ggtttaaacataagttggagtgttcctgtggagaagaatatagatcattt |
39524635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 39511129 - 39510957
Alignment:
| Q |
38 |
ccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgc |
137 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| || ||||||||| |||||| || |||| | | ||||| ||| |||| || | |||| |
|
|
| T |
39511129 |
ccgatacattatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttg---gtgatattaaacacgctgc |
39511033 |
T |
|
| Q |
138 |
aaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt |
213 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||||||| |||||| | |||||| |||||||| |||||||| |
|
|
| T |
39511032 |
aaatgatgaatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
| Q |
58 |
tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtc |
157 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||| |||||||||||| ||||||| |||| |||| |||||||||| |||| ||||||||||| |
|
|
| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
|
| Q |
158 |
caaattcaaatcaatatattgctccagac |
186 |
Q |
| |
|
||||||||||| | |||||| ||||||| |
|
|
| T |
39580443 |
caaattcaaatatacatattggtccagac |
39580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University