View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_68 (Length: 267)
Name: NF11635_high_68
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_68 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 43742583 - 43742337
Alignment:
| Q |
4 |
gttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctcaagctc |
103 |
Q |
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| T |
43742583 |
gttgtcgttttgaaggagcaaaactttaccagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctcaagctc |
43742484 |
T |
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| Q |
104 |
tggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattgggttgggttgaaatcatatgtagaaaatcttagg |
203 |
Q |
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| T |
43742483 |
tggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattggattgggttgaaatcatatgtagaaaatcttagg |
43742384 |
T |
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| Q |
204 |
caattaatgaggaaaatcaaaatatgaccataaattagtctaaattt |
250 |
Q |
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| T |
43742383 |
caattaatgaggaaaatcaaaatatgaccataaattagtctaaattt |
43742337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21886067 - 21886197
Alignment:
| Q |
1 |
gatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctcaag |
100 |
Q |
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|||||||||||||||| |||| |||||| |||| ||||||||||| ||||||||| | |||||||| || |||||||| |||||||| || | ||||| |
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| T |
21886067 |
gatgttgtcgttttgattgagcgaaacttcactaccgtaattgaaaacaaccaattcgtgatggttgaattttatgctccgtggtgtggacattgtcaag |
21886166 |
T |
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| Q |
101 |
ctctggtgctggagtatgctgcagctgcgac |
131 |
Q |
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| T |
21886167 |
ctttggcgccagagtatgctgcggcggcgac |
21886197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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