View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_high_73 (Length: 240)

Name: NF11635_high_73
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_high_73
NF11635_high_73
[»] chr1 (10 HSPs)
chr1 (6-176)||(5144222-5144390)
chr1 (180-238)||(5143178-5143236)
chr1 (98-226)||(33004051-33004180)
chr1 (99-186)||(12744600-12744687)
chr1 (99-186)||(12755590-12755677)
chr1 (128-215)||(40226290-40226377)
chr1 (98-211)||(18649404-18649517)
chr1 (167-238)||(17092501-17092573)
chr1 (97-213)||(32150972-32151088)
chr1 (99-238)||(50371858-50371998)
[»] chr6 (3 HSPs)
chr6 (99-238)||(12606377-12606517)
chr6 (98-196)||(32048397-32048495)
chr6 (97-141)||(29333259-29333303)
[»] chr4 (5 HSPs)
chr4 (128-213)||(49952195-49952280)
chr4 (103-238)||(5472871-5473007)
chr4 (99-234)||(48317302-48317438)
chr4 (98-158)||(19651549-19651609)
chr4 (99-141)||(13073486-13073528)
[»] chr7 (2 HSPs)
chr7 (98-196)||(23823894-23823992)
chr7 (99-226)||(16802069-16802197)
[»] chr2 (5 HSPs)
chr2 (98-238)||(10046500-10046640)
chr2 (102-238)||(37560119-37560256)
chr2 (98-208)||(14853421-14853531)
chr2 (98-238)||(10026639-10026780)
chr2 (167-238)||(26805307-26805379)
[»] scaffold0170 (1 HSPs)
scaffold0170 (99-238)||(9791-9931)
[»] chr3 (3 HSPs)
chr3 (167-213)||(2029317-2029363)
chr3 (97-238)||(13893867-13894009)
chr3 (102-214)||(31072824-31072936)
[»] chr8 (2 HSPs)
chr8 (98-151)||(22810026-22810079)
chr8 (99-191)||(6940505-6940597)
[»] chr5 (1 HSPs)
chr5 (161-214)||(25467416-25467469)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 5144390 - 5144222
Alignment:
Q  6 ataaccctccatatatattttgtaatgtttgattgttttatttctaacaaaattaatgtttgattttctttcggtaagatatcatcataggctaaccaag 105  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  5144390 ataaccctccatatat--tttgtaatgtttgattgttttatttctaacaaaattaatgtttgattttcgttcggtaagatatcatcataggctaatcaag 5144293  T
Q  106 ttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcagg 176  Q
    |||||||||||  |||| |||| |||||||| |||||| ||||| | | |||||| ||||  |||||||||    
T  5144292 ttgtttgggcttcaatggtaataagctcctttcaagaacgtatctggagaatatcggattcaattttcagg 5144222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 5143236 - 5143178
Alignment:
Q  180 aacaacgtttggtcagtacgtaggcctctacgcacagacggattagtagcccacctttg 238  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||| || ||||||||    
T  5143236 aacaacgcttggtcagtacgcatgcctctacgcacagacggattagtcgctcacctttg 5143178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 33004180 - 33004051
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagta 197  Q
    ||||||||||| |||||||| | |||| | |||||||||||||| | |||||||   |||||| |||| ||||| |||| ||||||| | |||| ||||     
T  33004180 taaccaagttgcttgggctccagtgatgaggagctccttccaaggacgtatccggggaatatcggattcgatttccaggggaaacaatgcttggccagtg 33004081  T
Q  198 cgtaggcctctacgcac-agacggattagt 226  Q
    || | |||||||||||| || |||||||||    
T  33004080 cgcatgcctctacgcacgagccggattagt 33004051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 12744687 - 12744600
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacg 186  Q
    ||||||||||||||| ||| | ||| | ||| ||||||||||| | ||||| ||  ||||||||||| |||||||||| | |||||||    
T  12744687 aaccaagttgtttggactccagtgacattgaactccttccaaggacgtatctgaggaatatcagattcgattttcagggggaacaacg 12744600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 12755677 - 12755590
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacg 186  Q
    ||||||||||||||| ||| | ||| | ||| ||||||||||| | ||||| ||  ||||||||||| |||||||||| | |||||||    
T  12755677 aaccaagttgtttggactccagtgacattgaactccttccaaggacgtatctgaggaatatcagattcgattttcagggggaacaacg 12755590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 40226377 - 40226290
Alignment:
Q  128 gagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtacgtaggcctctacgcaca 215  Q
    |||||||||||||| | |||| |||| ||||||| ||| |||| ||||  | ||||||| |||||||||| | | |||||||||||||    
T  40226377 gagctccttccaaggacgtattcgaagaatatcatattcgattatcagaggtaacaacgcttggtcagtatgcatgcctctacgcaca 40226290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 18649517 - 18649404
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagta 197  Q
    ||||||||||| |||  ||||| || |||||||||||||||||| | ||||| | | |||||| | || |||||||||| | ||||||| |||  ||||     
T  18649517 taaccaagttgcttgaactctagtggtaatgagctccttccaaggacgtatctggagaatatcgggttcgattttcagggggaacaacgcttgaccagtg 18649418  T
Q  198 cgtaggcctctacg 211  Q
    || | |||||||||    
T  18649417 cgcatgcctctacg 18649404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 17092573 - 17092501
Alignment:
Q  167 gattttcaggagaaacaacgtttggtcagtacgtaggcctctacgcac-agacggattagtagcccacctttg 238  Q
    |||||||||| ||||||||| |||| ||||  ||| |||||||||||| || ||||||||| | |||||||||    
T  17092573 gattttcaggggaaacaacgattggccagtgtgtatgcctctacgcacgagccggattagtcgtccacctttg 17092501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 32151088 - 32150972
Alignment:
Q  97 ctaaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagt 196  Q
    ||||| ||||||||||||||| | ||  || |||||||||||||| | || | |||  |||||||| || ||||| |||| | |||||| ||||||||||    
T  32151088 ctaacaaagttgtttgggctccagtggcaaggagctccttccaaggacgttttcgaggaatatcaggttcgatttccagggggaacaacatttggtcagt 32150989  T
Q  197 acgtaggcctctacgca 213  Q
     || | |||| ||||||    
T  32150988 gcgcatgcctttacgca 32150972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 50371998 - 50371858
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtac 198  Q
    |||||| |||||||||||| | ||  || |||||||||| ||| | ||||| ||| |||| |   || |||||||||||  ||||||| |||| ||||||    
T  50371998 aaccaaattgtttgggctcaagtggcaaggagctccttctaaggatgtatctgaaaaatagcgtgttcgattttcaggaagaacaacgcttggccagtac 50371899  T
Q  199 gtaggcctctacgcac-agacggattagtagcccacctttg 238  Q
    | | || ||||||||| || ||||||||| ||||| |||||    
T  50371898 gcatgcttctacgcacaagccggattagtcgcccatctttg 50371858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 12606377 - 12606517
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtac 198  Q
    |||||| ||| |||||||||  ||  ||||||||||||||||||| |||||||   |||| |||||| ||||| |||| | |||||||||||| |||| |    
T  12606377 aaccaaattgcttgggctctgctggcaatgagctccttccaagaacgtatccggggaataccagattcgatttccagggggaacaacgtttggccagtgc 12606476  T
Q  199 gtaggcctctacgcac-agacggattagtagcccacctttg 238  Q
    | | |||||||||||| || ||||||||| |||||||||||    
T  12606477 gcatgcctctacgcacgagccggattagtcgcccacctttg 12606517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 32048397 - 32048495
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagt 196  Q
    |||| ||||||||||| ||| | || ||| |||||||||||||| | |||  |||  ||||||||||| ||||||||||   |||||||||||||||||    
T  32048397 taactaagttgtttggactccagtggtaaggagctccttccaaggatgtactcgaggaatatcagattcgattttcagggagaacaacgtttggtcagt 32048495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 29333303 - 29333259
Alignment:
Q  97 ctaaccaagttgtttgggctctaatgataatgagctccttccaag 141  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||    
T  29333303 ctaaccaagttgtttgggctctagtggcaatgagctccttccaag 29333259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 49952280 - 49952195
Alignment:
Q  128 gagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtacgtaggcctctacgca 213  Q
    |||||||||||||| | |||| ||   ||||| || |||||||||||| |||||||||||||||||||| || | |||||||||||    
T  49952280 gagctccttccaaggacgtattcgggaaatattaggtttgattttcagaagaaacaacgtttggtcagtgcgcacgcctctacgca 49952195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 5473007 - 5472871
Alignment:
Q  103 aagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtacgtag 202  Q
    ||||||||||||||| | ||  || |||||| || |||| | |||||||   |||| ||| ||||||| ||||| ||||||||| |||| |||| || |     
T  5473007 aagttgtttgggctccagtggcaaggagctcatttcaaggacgtatccggggaataccaggtttgattctcaggggaaacaacgcttggccagtgcgcat 5472908  T
Q  203 gcctctacgcac-agacggattagtagcccacctttg 238  Q
    |||||||||||| || ||||||||| |||||||||||    
T  5472907 gcctctacgcacgagccggattagtcgcccacctttg 5472871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 48317438 - 48317302
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtac 198  Q
    |||||||||| |||||||| | ||  || |||||| ||||||  | |||| |||| ||||   |||| |||||||||||| ||||||| |||||||||      
T  48317438 aaccaagttgcttgggctccagtggcaaagagctcattccaatgacgtattcgaaaaatactggattcgattttcaggaggaacaacgcttggtcagtgt 48317339  T
Q  199 gtaggcctctacgcac-agacggattagtagcccacc 234  Q
    ||| |||||||||||| || ||||||||| |||||||    
T  48317338 gtatgcctctacgcacgagccggattagtcgcccacc 48317302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 19651609 - 19651549
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaata 158  Q
    |||||||||||||||||||| | ||  ||||||||||||||||| | ||||||||| ||||    
T  19651609 taaccaagttgtttgggctccagtggcaatgagctccttccaaggacgtatccgaagaata 19651549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 13073486 - 13073528
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaag 141  Q
    ||||||||||||||||||||| ||  |||||||||||||||||    
T  13073486 aaccaagttgtttgggctctagtggcaatgagctccttccaag 13073528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 23823894 - 23823992
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagt 196  Q
    |||||||||||||||  |||   || ||| |||||||||| ||| | ||||||||  |||||||||||||||| ||| | |||||||||||||| ||||    
T  23823894 taaccaagttgtttgcactccggtggtaaggagctccttctaaggacgtatccgaggaatatcagatttgattctcaagggaaacaacgtttggccagt 23823992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 16802069 - 16802197
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtac 198  Q
    ||||||||||  ||||||| | ||  ||||||||||||||||| | ||| |||   |||| | |||| |||| | ||||| ||||||| |||| |||| |    
T  16802069 aaccaagttgcctgggctccagtggcaatgagctccttccaaggacgtacccggggaataccggattcgattcttaggaggaacaacgattggccagtgc 16802168  T
Q  199 gtaggcctctacgcac-agacggattagt 226  Q
    ||| |||||||||||| || |||||||||    
T  16802169 gtatgcctctacgcacgagccggattagt 16802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 10046640 - 10046500
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagta 197  Q
    ||||||||||| |||||||| ||||  || |||||||||||||||| ||||||| | |||| | | || |||| ||| | |||||||||||| | ||||     
T  10046640 taaccaagttgcttgggctccaatggcaaggagctccttccaagaacgtatccggagaataccgggttcgattctcaagggaaacaacgttt-gacagtg 10046542  T
Q  198 cgtaggcctctacgca-cagacggattagtagcccacctttg 238  Q
    || | |||||||||||  || ||||||||| | |||||||||    
T  10046541 cgcatgcctctacgcatgagccggattagtcgaccacctttg 10046500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 37560119 - 37560256
Alignment:
Q  102 caagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtacgta 201  Q
    |||||||||||||||| | || |||  ||||||||||||| | ||| ||||  |||| ||| || |||| ||| | | ||||||||||||||||| || |    
T  37560119 caagttgtttgggctccagtggtaagaagctccttccaaggacgtacccgaggaataccaggttcgattctcaaggggaacaacgtttggtcagtgcgca 37560218  T
Q  202 ggcctctacgcac-agacggattagtagcccacctttg 238  Q
     |||||||||||| || ||||||| | | |||||||||    
T  37560219 tgcctctacgcacgagccggattaatcgtccacctttg 37560256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 14853531 - 14853421
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagta 197  Q
    |||||||||||||||||||| | ||  || || |||||| |||| | |||||||   |||| |||||| |||||||||| | |||||| ||||| ||||     
T  14853531 taaccaagttgtttgggctccagtggcaaggaactcctttcaaggatgtatccggggaataccagattcgattttcagggggaacaacttttggccagtg 14853432  T
Q  198 cgtaggcctct 208  Q
    |||| ||||||    
T  14853431 cgtatgcctct 14853421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 10026780 - 10026639
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagta 197  Q
    ||||||||||| |||||||| ||||  || |||||||||||||| | |||  || | |||| | | || |||| ||||| | |||||||||||| ||||     
T  10026780 taaccaagttgcttgggctccaatggcaaggagctccttccaaggacgtactcggaaaataccgggttcgattctcagggggaacaacgtttggccagtg 10026681  T
Q  198 cgtaggcctctacgca-cagacggattagtagcccacctttg 238  Q
    || | |||||||||||  || ||||||||| | |||||||||    
T  10026680 cgcatgcctctacgcatgagccggattagtcgaccacctttg 10026639  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 26805307 - 26805379
Alignment:
Q  167 gattttcaggagaaacaacgtttggtcagtacgtaggcctctacgca-cagacggattagtagcccacctttg 238  Q
    |||||||||||||||| |||||||| |||| |  | |||||||||||  || ||||||||| |||||||||||    
T  26805307 gattttcaggagaaacgacgtttggccagtgcacatgcctctacgcatgagtcggattagtcgcccacctttg 26805379  T

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Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 9791 - 9931
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtac 198  Q
    ||||||||||||| | ||| | ||| || |||||||||||||| | ||||| ||  |||| | |||| ||||| |||| | ||||||| |||| |||| |    
T  9791 aaccaagttgttttgactccagtgacaaggagctccttccaaggatgtatctgaggaataccggattcgatttccagggggaacaacgcttggccagtgc 9890  T
Q  199 gtaggcctctacgcac-agacggattagtagcccacctttg 238  Q
    | | |||||||||||| || ||||||||| | |||||||||    
T  9891 gcatgcctctacgcacgagccggattagtcgtccacctttg 9931  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 2029363 - 2029317
Alignment:
Q  167 gattttcaggagaaacaacgtttggtcagtacgtaggcctctacgca 213  Q
    |||||||||||||||||||| ||||| |||||| | |||||||||||    
T  2029363 gattttcaggagaaacaacgcttggttagtacgcatgcctctacgca 2029317  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 13893867 - 13894009
Alignment:
Q  97 ctaaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagt 196  Q
    ||||||||||||||||||||| | ||  || |||||||||||||| | || ||||   |||| | | || ||||| |||| | ||||||| ||||||| |    
T  13893867 ctaaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtgtccggggaataccgggttggatttccagggggaacaacgcttggtcaat 13893966  T
Q  197 acgtaggcctctacgcac-agacggattagtagcccacctttg 238  Q
     || | |||||||| ||| || ||||||||| |||||||||||    
T  13893967 gcgcatgcctctacacacgagccggattagtcgcccacctttg 13894009  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 31072824 - 31072936
Alignment:
Q  102 caagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttggtcagtacgta 201  Q
    |||||||||||||||| ||||  || ||||||||| |||| | ||| ||| | |||| ||| || ||||| |||| | ||||||| ||||||||| |  |    
T  31072824 caagttgtttgggctccaatggcaaggagctcctttcaaggacgtacccggagaataccaggttcgatttccagggggaacaacgcttggtcagtgcaca 31072923  T
Q  202 ggcctctacgcac 214  Q
     ||||||||||||    
T  31072924 tgcctctacgcac 31072936  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 22810026 - 22810079
Alignment:
Q  98 taaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccg 151  Q
    |||||||||||||||||||||| ||  || |||||||||||||| | |||||||    
T  22810026 taaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtatccg 22810079  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 6940505 - 6940597
Alignment:
Q  99 aaccaagttgtttgggctctaatgataatgagctccttccaagaaagtatccgaacaatatcagatttgattttcaggagaaacaacgtttgg 191  Q
    ||||||||||||||||||| | || ||| |||||| ||||||| | ||||||| | |||||| | || ||||| |||| | ||||||| ||||    
T  6940505 aaccaagttgtttgggctccagtggtaaggagctcattccaaggaggtatccggaaaatatcgggttcgatttccaggtggaacaacgcttgg 6940597  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 25467416 - 25467469
Alignment:
Q  161 agatttgattttcaggagaaacaacgtttggtcagtacgtaggcctctacgcac 214  Q
    ||||| |||||||||||| ||||||| |||| ||||||| | ||||||||||||    
T  25467416 agattcgattttcaggaggaacaacgattggccagtacgcatgcctctacgcac 25467469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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