View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_high_77 (Length: 230)
Name: NF11635_high_77
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_high_77 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 39581158 - 39580929
Alignment:
| Q |
1 |
acttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag |
100 |
Q |
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| T |
39581158 |
acttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag |
39581059 |
T |
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| Q |
101 |
ctccaaagtaacaagtcaatcatcatcactatcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaa |
200 |
Q |
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| T |
39581058 |
ctccaaagtaacaagtcaatcatcatcactatcaacaccactttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaa |
39580959 |
T |
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| Q |
201 |
accgtaccaaacaacacttacatggtacgt |
230 |
Q |
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| T |
39580958 |
accgtaccaaacaacacttacatggtacgt |
39580929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 39544765 - 39544644
Alignment:
| Q |
1 |
acttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag |
100 |
Q |
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| T |
39544765 |
acttcatcaattgcggatcagatattgacgtgaatgaaaataacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaag |
39544666 |
T |
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| Q |
101 |
ctccaaagtaacaagtcaatca |
122 |
Q |
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| T |
39544665 |
ctccaaagtaacaagtcaatca |
39544644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 39521975 - 39521755
Alignment:
| Q |
1 |
acttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag |
100 |
Q |
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| T |
39521975 |
acttcatcaattgtggatcagatatcgacgtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaag |
39521876 |
T |
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| Q |
101 |
---ctccaaagtaacaagtcaatcatcatcactatcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattc |
197 |
Q |
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| T |
39521875 |
taactccaaagtaacaagtca---atcaccagtgtc---------ttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattc |
39521788 |
T |
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| Q |
198 |
aaaaccgtaccaaacaacacttacatggtacgt |
230 |
Q |
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| T |
39521787 |
aaaaccgttccaagcaacacttacatggtacgt |
39521755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 39525441 - 39525252
Alignment:
| Q |
29 |
tgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatca |
128 |
Q |
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| T |
39525441 |
tgttactgaaagtaataaagtttatattggggaatcaaaccccaactaccctaaaacaagtttcagcaaaagctccatagaaaccagtcaatcatcagtg |
39525342 |
T |
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| Q |
129 |
ctatcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtac |
228 |
Q |
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| T |
39525341 |
cc------------ttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatggtac |
39525254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 39544636 - 39544551
Alignment:
| Q |
142 |
tttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggta |
227 |
Q |
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| T |
39544636 |
tttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggta |
39544551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 39511596 - 39511509
Alignment:
| Q |
143 |
ttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgt |
230 |
Q |
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| T |
39511596 |
ttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaacaacacctatatggtacgt |
39511509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39576620 - 39576552
Alignment:
| Q |
1 |
acttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaacc |
69 |
Q |
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| T |
39576620 |
acttcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaacc |
39576552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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