View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_low_1 (Length: 945)

Name: NF11635_low_1
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_low_1
NF11635_low_1
[»] chr7 (6 HSPs)
chr7 (6-934)||(33353322-33354249)
chr7 (14-234)||(33346981-33347201)
chr7 (266-500)||(33346727-33346963)
chr7 (514-545)||(1083880-1083911)
chr7 (368-406)||(39280983-39281021)
chr7 (368-405)||(35267377-35267414)
[»] chr6 (9 HSPs)
chr6 (6-187)||(9991825-9992006)
chr6 (6-187)||(9998960-9999141)
chr6 (6-187)||(10013214-10013395)
chr6 (92-187)||(10004762-10004857)
chr6 (368-400)||(738557-738589)
chr6 (368-407)||(835267-835306)
chr6 (370-407)||(2205610-2205647)
chr6 (368-405)||(4420658-4420695)
chr6 (470-537)||(32975866-32975935)
[»] chr5 (7 HSPs)
chr5 (470-542)||(26516181-26516255)
chr5 (470-542)||(32172536-32172610)
chr5 (369-405)||(7319421-7319457)
chr5 (368-407)||(4014442-4014481)
chr5 (368-407)||(40205092-40205131)
chr5 (470-542)||(20982248-20982322)
chr5 (328-393)||(16380550-16380615)
[»] chr8 (10 HSPs)
chr8 (367-408)||(31716244-31716285)
chr8 (368-406)||(43504765-43504803)
chr8 (491-542)||(2107461-2107513)
chr8 (368-402)||(2482881-2482915)
chr8 (368-406)||(3536963-3537001)
chr8 (368-406)||(3537047-3537085)
chr8 (471-535)||(12972746-12972812)
chr8 (493-542)||(26499596-26499646)
chr8 (365-403)||(29168072-29168110)
chr8 (490-542)||(7008512-7008565)
[»] chr3 (7 HSPs)
chr3 (328-407)||(37273147-37273225)
chr3 (368-421)||(21367666-21367719)
chr3 (472-542)||(49772783-49772857)
chr3 (368-407)||(23793597-23793636)
chr3 (368-407)||(44284098-44284137)
chr3 (368-407)||(44488896-44488935)
chr3 (368-453)||(24887301-24887386)
[»] chr1 (4 HSPs)
chr1 (368-407)||(12564517-12564556)
chr1 (368-420)||(37842373-37842425)
chr1 (368-407)||(7137016-7137055)
chr1 (368-453)||(30257650-30257735)
[»] chr2 (6 HSPs)
chr2 (368-453)||(11513865-11513950)
chr2 (368-420)||(29628761-29628813)
chr2 (368-403)||(29316793-29316828)
chr2 (333-407)||(34652020-34652093)
chr2 (365-406)||(15203456-15203497)
chr2 (362-407)||(36114432-36114476)
[»] scaffold0167 (1 HSPs)
scaffold0167 (373-420)||(17276-17323)
[»] chr4 (3 HSPs)
chr4 (368-407)||(14011247-14011286)
chr4 (368-407)||(29912961-29913000)
chr4 (367-420)||(17822882-17822935)


Alignment Details
Target: chr7 (Bit Score: 876; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 6 - 934
Target Start/End: Complemental strand, 33354249 - 33353322
Alignment:
Q  6 aggagcacagagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaa 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354249 aggagcacaaagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaa 33354150  T
Q  106 ggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354149 ggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgat 33354050  T
Q  206 atcaaaggtatgattgattttaaattttagaaatagcaaaaacaattactggcttatgatatcgactatgtgcctactggcttatttgaccttactagca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354049 atcaaaggtatgattgattttaaattttagaaatagcaaaaacacttactggcttatgatatcgactatgtgcctactggcttatttgaccttactagca 33353950  T
Q  306 aaaacacttgttcctatatggtagagattatggaaaaaacttaagagttgtccatcagctgtttttcagcttatttctataagttctccaagatagctta 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33353949 aaaacacttgttcctatatggtagagattatggaaaaaacttaagagttgtccatcagctgtttttcggcttatttctataagttctccaagatagctta 33353850  T
Q  406 tgggatcaacttatacctgatatgcatgcagcttgactttattttatcccnnnnnnnattataaagaaatagcttgtacataactcttatatgataagcg 505  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  33353849 tgagatcaacttatacctgatatgcatgcagcttgactttattttatccctttttttattataaagaaatagcttgtacataactcttatatgataagcg 33353750  T
Q  506 catatgcttaagcgcttaattaagttgtttattcaaatggttgctactcttgttaatattgtatacttcatatgatcagggactacaattctcaatgctg 605  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353749 catatgctt-agcgcttaattaagttgtttattcaaatggttgctactcttgttaatattgtatacttcatatgatcagggactacaattctcaatgctg 33353651  T
Q  606 tgaaaaacactgttgatcctgagaccacagtgatctacaaggagaaccctgataaagaatttcttgaatccaatgaattttgctatgctatagtagtagt 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353650 tgaaaaacactgttgatcctgagaccacagtgatctacaaggagaaccctgataaagaatttcttgaatccaatgaattttgctatgctatagtagtagt 33353551  T
Q  706 aggagagcatccttatgctgaaatgcatggtgacaatatgaacttgacaatcccaaaccctggtcctgagatcataacaaatgtttgtggagctatgaag 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353550 aggagagcatccttatgctgaaatgcatggtgacaatatgaacttgacaatcccaaaccctggtcctgagatcataacaaatgtttgtggagctatgaag 33353451  T
Q  806 tgtgtggttatcattatttcgggccggcctttagttatcgaaccgtatgttggtttgatagatgcagttgttgctggttggctaccaggtagtgaaggac 905  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33353450 tgtgtggttatcattatttcgggccggcctttagttattgaaccgtatgttggtttgatagatgcagttgttgctggttggctaccaggtagtgaaggac 33353351  T
Q  906 aaggtgtggctgatgttttatttgatgat 934  Q
    |||||||||||||||||||||||| ||||    
T  33353350 aaggtgtggctgatgttttatttggtgat 33353322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 33347201 - 33346981
Alignment:
Q  14 agagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaaggttccaa 113  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33347201 agagaactggctagggatgctgtgaggaaatccatggtccttctaaaaaatggtaaatctcctgagaagcctttgttacctcttcctaaaaaggttccaa 33347102  T
Q  114 aaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgatatcaaagg 213  Q
    | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  33347101 agatacttgtggccggaagccatgcaaataatctaggacatcagtgcggtggctggaccattgaatggcaaggagtcagtggcaacgatgatatcaaagt 33347002  T
Q  214 tatgattgattttaaatttta 234  Q
    |||||||  |||| |||||||    
T  33347001 tatgattagtttttaatttta 33346981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 266 - 500
Target Start/End: Complemental strand, 33346963 - 33346727
Alignment:
Q  266 atcgactatgtgcctactggcttatttgaccttactagc----aaaaacacttgttcctatatggtagagattatggaaaaaacttaagagttgtccatc 361  Q
    ||||||||||||||| ||||||||||||||| |||||||    |||||||||||||||| |||||||||||||||||||||||| || || ||||||||     
T  33346963 atcgactatgtgccttctggcttatttgaccatactagctagcaaaaacacttgttcctgtatggtagagattatggaaaaaacata-gacttgtccata 33346865  T
Q  362 agctgtttttcagcttatttctataagttctccaagatagcttatgggatcaacttatacctgatatgcatgcagcttgactttattttatcccnnnnnn 461  Q
    ||||||||   |  ||||||||||||| |||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||           
T  33346864 agctgtttccgaa-ttatttctataagctctccaagatagcttatgagatcaacttatagcttttatgcatgcagcttgactttattttatccatttttt 33346766  T
Q  462 nattataaagaaatagcttgtacataactcttatatgat 500  Q
     |||||| ||||||||| |||||||||||||||||||||    
T  33346765 tattatatagaaatagcatgtacataactcttatatgat 33346727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 545
Target Start/End: Original strand, 1083880 - 1083911
Alignment:
Q  514 taagcgcttaattaagttgtttattcaaatgg 545  Q
    ||||||||||||||||||||||||||||||||    
T  1083880 taagcgcttaattaagttgtttattcaaatgg 1083911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 39281021 - 39280983
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttat 406  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  39281021 ttttcagcttatttccatatgttctccaagatagcttat 39280983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 35267414 - 35267377
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagctta 405  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  35267414 ttttcagcttatttctataagctctccaagataactta 35267377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 9991825 - 9992006
Alignment:
Q  6 aggagcacagagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaa 105  Q
    ||||||| || ||| |||||||||||||||| ||||||||  |||| ||  |||| |||||| ||  |||||| |||||  |  | ||||||||||||||    
T  9991825 aggagcatagggaattggctagggaagctgtgaggaaatcattggtactattaaagaatggtgaaaatgctgataagccgcttcttcctcttcctaaaaa 9991924  T
Q  106 ggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga 187  Q
    || |||||||||||| || || ||||| |||||  |||||||||||||||| |||||||| ||||||||| | |||||||||    
T  9991925 ggctccaaaaatactcgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcagtggcaagga 9992006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 9998960 - 9999141
Alignment:
Q  6 aggagcacagagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaa 105  Q
    ||||||| || ||| ||||||||||||| || ||||||||  |||| ||  |||| |||||| ||  || ||| |||||  |  | ||||||||||||||    
T  9998960 aggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttcctcttcctaaaaa 9999059  T
Q  106 ggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga 187  Q
    || | | ||||||||||| || ||||| |||||  |||||||||||||||| |||||||| ||||||||| |||||||||||    
T  9999060 ggcttccaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaagga 9999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 10013214 - 10013395
Alignment:
Q  6 aggagcacagagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaa 105  Q
    ||||||| |||||| ||||||| |||||||| ||||||||  |||| ||  | || || ||||||  | |||| |||||  |  | ||||||||||||||    
T  10013214 aggagcatagagaattggctagagaagctgttaggaaatcattggtactattgaagaacggtaaaagttctgataagccgatacttcctcttcctaaaaa 10013313  T
Q  106 ggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga 187  Q
    || ||||||||||||||| || |||||||||||  ||||| ||||| |||| |||||||| |||||||||  ||||||||||    
T  10013314 ggctccaaaaatacttgttgctggaagccatgctgataatataggaaatcaatgtggtggatggaccattacatggcaagga 10013395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 10004762 - 10004857
Alignment:
Q  92 cctcttcctaaaaaggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga 187  Q
    |||||||||||||||  | ||||||||||||| || ||||| |||||  |||||||||||||||| |||||||| ||||||||| |||||||||||    
T  10004762 cctcttcctaaaaagtcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaagga 10004857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 738557 - 738589
Alignment:
Q  368 ttttcagcttatttctataagttctccaagata 400  Q
    |||||||||||||||||||||||||||||||||    
T  738557 ttttcagcttatttctataagttctccaagata 738589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 835267 - 835306
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatg 835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 2205610 - 2205647
Alignment:
Q  370 ttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatg 2205647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 4420695 - 4420658
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagctta 405  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  4420695 ttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 32975935 - 32975866
Alignment:
Q  470 agaaatagcttgtacataa-ctcttatatgataagcgcatatgct-taagcgcttaattaagttgtttat 537  Q
    ||||||| ||| ||||||| | ||||||||| |||||| |||||| ||| ||||||||||||||||||||    
T  32975935 agaaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgtttat 32975866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 26516255 - 26516181
Alignment:
Q  470 agaaatagcttgtacataa-ctcttatatgataagcgcatatgct-taagcgcttaattaagttgtttattcaaa 542  Q
    ||||||||||| ||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  26516255 agaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 32172610 - 32172536
Alignment:
Q  470 agaaatagcttgtacataa-ctcttatatgataagcgcatatgct-taagcgcttaattaagttgtttattcaaa 542  Q
    |||||||| || ||||||| ||||| |||||||||||| |||||| |||||||||||||| ||||||||| ||||    
T  32172610 agaaatagtttatacataagctcttgtatgataagcgcttatgctgtaagcgcttaattatgttgtttatccaaa 32172536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 7319457 - 7319421
Alignment:
Q  369 tttcagcttatttctataagttctccaagatagctta 405  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7319457 tttcagcttatttttataagttctccaagatagctta 7319421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 4014442 - 4014481
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  4014442 ttttcagcttattttcataagttctccaagatagcttatg 4014481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 40205092 - 40205131
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  40205092 ttttcagcttatttctataagctctccaggatagcttatg 40205131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 470 - 542
Target Start/End: Original strand, 20982248 - 20982322
Alignment:
Q  470 agaaatagcttgtacataa-ctcttatatgataagcgcatatgct-taagcgcttaattaagttgtttattcaaa 542  Q
    ||||||||||| ||||||| | |||||||||||||| | |||||| ||||| |||||| ||||||||||| ||||    
T  20982248 agaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 16380550 - 16380615
Alignment:
Q  328 agagattatggaaaaaacttaagagttgtccatcagctgtttttcagcttatttctataagttctc 393  Q
    |||| ||||||||| | |||| ||  ||||||| ||||||||| ||||||||||| ||||||||||    
T  16380550 agagtttatggaaacagcttacgacatgtccataagctgttttgcagcttatttccataagttctc 16380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 31716244 - 31716285
Alignment:
Q  367 tttttcagcttatttctataagttctccaagatagcttatgg 408  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  31716244 tttttcagcttatttctataacttctccaagatagcttatgg 31716285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 43504803 - 43504765
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttat 406  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  43504803 ttttcagcttatttccataagttctccaagatagcttat 43504765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 542
Target Start/End: Original strand, 2107461 - 2107513
Alignment:
Q  491 cttatatgataagcgcatatgct-taagcgcttaattaagttgtttattcaaa 542  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||    
T  2107461 cttatatgataagcgcataagctataaacgcttaattaagttgtttatccaaa 2107513  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 2482915 - 2482881
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagc 402  Q
    ||||||||||||||||||||||| |||||||||||    
T  2482915 ttttcagcttatttctataagttatccaagatagc 2482881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 3536963 - 3537001
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttat 406  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  3536963 ttttcagcttatttccataagttctccaagatatcttat 3537001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 3537047 - 3537085
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttat 406  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  3537047 ttttcagcttatttccataagttctccaagatatcttat 3537085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 12972812 - 12972746
Alignment:
Q  471 gaaatagcttgtacataa-ctcttatatgataagcgcatatgct-taagcgcttaattaagttgttt 535  Q
    |||||||||| ||||||| | ||||||||||||  || |||||| ||||||||||||||||||||||    
T  12972812 gaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 26499646 - 26499596
Alignment:
Q  493 tatatgataagcgcatatgctt-aagcgcttaattaagttgtttattcaaa 542  Q
    |||||||||||||| |||| || |||| |||||||||||||||||||||||    
T  26499646 tatatgataagcgcttatgttttaagcacttaattaagttgtttattcaaa 26499596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 29168072 - 29168110
Alignment:
Q  365 tgtttttcagcttatttctataagttctccaagatagct 403  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  29168072 tgtttctcagcttatttccataagttctccaagatagct 29168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 7008565 - 7008512
Alignment:
Q  490 tcttatatgataagcgcatatgct-taagcgcttaattaagttgtttattcaaa 542  Q
    |||| |||||||| ||| |||||| |||||||||||||||||||||||| ||||    
T  7008565 tcttttatgataaacgcttatgctataagcgcttaattaagttgtttatccaaa 7008512  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 37273225 - 37273147
Alignment:
Q  328 agagattatggaaaaaacttaagagttgtccatcagctgtttttcagcttatttctataagttctccaagatagcttatg 407  Q
    |||| ||||||||| |||||| ||  ||||||| || |||||| || |||||||| ||||||||||||||||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgtttt-caacttatttccataagttctccaagatagcttatg 37273147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 21367719 - 21367666
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttatac 421  Q
    ||||||||||||||  ||||||||||||||||||||||||  | ||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatac 21367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 49772783 - 49772857
Alignment:
Q  472 aaatagcttgtacataa-ctcttatatgataagcgcatatgct---taagcgcttaattaagttgtttattcaaa 542  Q
    ||||||||| ||||||| | ||||||||||||| |  ||||||   |||||||||||||||||||||||||||||    
T  49772783 aaatagcttatacataaacacttatatgataagtgtctatgctatataagcgcttaattaagttgtttattcaaa 49772857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 23793636 - 23793597
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  23793636 ttttcagcttatttctataagctttccaagatagcttatg 23793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 44284098 - 44284137
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  44284098 ttttcagcttatttctataagctctccaggatagcttatg 44284137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 44488935 - 44488896
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  44488935 ttttcagcttatttccataagttctctaagatagcttatg 44488896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 24887301 - 24887386
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttatacctgatatgcatgcagcttgactttattttatc 453  Q
    ||||||||||||| | ||||| |||||| |||||||||||  | || ||| || || ||||| || ||| ||||||||||||||||    
T  24887301 ttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatc 24887386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 12564517 - 12564556
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatg 12564556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 37842373 - 37842425
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttata 420  Q
    |||||||||||||| |||||||||| ||||||||||||||  | |||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttata 37842425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 7137016 - 7137055
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatg 7137055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 30257735 - 30257650
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttatacctgatatgcatgcagcttgactttattttatc 453  Q
    |||||||||||||||||||||  ||||| ||||| |||||  | ||||||| | || ||||| |  ||| ||||||||||||||||    
T  30257735 ttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatc 30257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 11513950 - 11513865
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttatacctgatatgcatgcagcttgactttattttatc 453  Q
    ||||||||||||||| | |||||||||| |||||||||||  | ||||||||| || ||||| |  ||  ||||||||||||||||    
T  11513950 ttttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatc 11513865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 29628761 - 29628813
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatgggatcaacttata 420  Q
    ||||||||||||||| |||| || |||||||||||||||| || |||||||||    
T  29628761 ttttcagcttatttccataaattttccaagatagcttatgagaacaacttata 29628813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 29316793 - 29316828
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagct 403  Q
    ||||||||||||||| ||||||||||||||||||||    
T  29316793 ttttcagcttatttccataagttctccaagatagct 29316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 34652020 - 34652093
Alignment:
Q  333 ttatggaaaaaacttaagagttgtccatcagctgtttttcagcttatttctataagttctccaagatagcttatg 407  Q
    |||| |||| |||||| ||  ||||||| ||||||||| || |||||||| ||||| ||||||||||||||||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgtttt-caacttatttccataagctctccaagatagcttatg 34652093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 15203456 - 15203497
Alignment:
Q  365 tgtttttcagcttatttctataagttctccaagatagcttat 406  Q
    |||||||||| ||||||||||||||| |||| ||||||||||    
T  15203456 tgtttttcagtttatttctataagttttccacgatagcttat 15203497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 36114476 - 36114432
Alignment:
Q  362 agctgtttttcagcttatttctataagttctccaagatagcttatg 407  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||    
T  36114476 agctgttttt-agcttatttttataagatctccaagatagcttatg 36114432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 17323 - 17276
Alignment:
Q  373 agcttatttctataagttctccaagatagcttatgggatcaacttata 420  Q
    |||||||| ||||||||||||||||||||||||||  | |||||||||    
T  17323 agcttattgctataagttctccaagatagcttatgaaaacaacttata 17276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 14011286 - 14011247
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  14011286 ttttcagcttatttccataagctctccaagatagcttatg 14011247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 29913000 - 29912961
Alignment:
Q  368 ttttcagcttatttctataagttctccaagatagcttatg 407  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  29913000 ttttcagcttatttttataagttgtccaagatagcttatg 29912961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 17822882 - 17822935
Alignment:
Q  367 tttttcagcttatttctataagttctccaagatagcttatgggatcaacttata 420  Q
    ||||| |||||||||  ||||||||||||||||||||||||  | |||||||||    
T  17822882 ttttttagcttattttcataagttctccaagatagcttatgaaaacaacttata 17822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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