View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_12 (Length: 561)
Name: NF11635_low_12
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 6 - 542
Target Start/End: Original strand, 32528266 - 32528802
Alignment:
| Q |
6 |
aggagcagagaggtggtgctaagtgctaacgctaaagctactttgatacgaaaaagggacagaattttgtgctctgttatcggctttctattcagcactc |
105 |
Q |
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| T |
32528266 |
aggagcaatgaggtggtgctaagtgctaacgctaaagctactttgatacgaaaaagggacagaatttcgtgccctgttatcggctttctattcagcactc |
32528365 |
T |
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| Q |
106 |
atcaatgtgaaggtaagctaaaagcacaacactctctacaagtaaatgtttgagaagctttagctaggctctatgtaagcatgactttctgcaaaaggga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528366 |
atcaatgtgaaggtaagctaaaagcacaacactctctacaagtaaatgtttgagaagctttagctaggctctatgtaagcatgactttctgcaaaaggga |
32528465 |
T |
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| Q |
206 |
aaagtgagatcaataatcatacaatatatccagtactttatctgaattgaaaatttaattcacaaaaatctaaaagtgaatttgttgttgtctgctgatt |
305 |
Q |
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| T |
32528466 |
aaagtgagatcaataatcatacaatatatccagtaatttatctgaattgaaaatttaattcacaaaaatctaaaagtgaatttgttgttgtctgctgatt |
32528565 |
T |
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| Q |
306 |
ttataaagcagctcactttggaggagctttttcagtccaacatatggactccaagtggat-ctagttcctaactgaactatctgaaggtgcacaaacaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
32528566 |
ttataaagcagctcactttggaggagctttttcagtccaacatatggactccaagtggatcctagttcctaactgaactatctgaaggtgcacaaac-aa |
32528664 |
T |
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| Q |
405 |
gaaaagaagcattcttattgaatacttttattgttattgtctttccaaagttgaaggcctgtgaatcaaaacagcagtgagatcacactgattgcacata |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528665 |
gaaaagaagcattcttattgaatacttttattgttattgtctttccaaagttgaaggcctgtgaatcaaaacagcagtgagatcacactgattgcacata |
32528764 |
T |
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| Q |
505 |
tatgtttcttttcaagagtgctagacaatggcctttac |
542 |
Q |
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| T |
32528765 |
tatgtttcttttcaagagtgctagacaatggcctttac |
32528802 |
T |
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