View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_13 (Length: 558)
Name: NF11635_low_13
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Complemental strand, 53424823 - 53424378
Alignment:
| Q |
23 |
aagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatcnnn |
122 |
Q |
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| T |
53424823 |
aagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaa |
53424724 |
T |
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| Q |
123 |
nnnn-ttattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatga |
221 |
Q |
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| T |
53424723 |
aaaaattattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatga |
53424624 |
T |
|
| Q |
222 |
tggttacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat |
321 |
Q |
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| T |
53424623 |
tggttacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat |
53424524 |
T |
|
| Q |
322 |
gatttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaattta |
421 |
Q |
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| T |
53424523 |
gacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaattta |
53424424 |
T |
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| Q |
422 |
cggtatatcaagaagattaatggatatacaccatcaatataaagtt |
467 |
Q |
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| T |
53424423 |
cggtatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 154 - 397
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
| Q |
154 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
250 |
Q |
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| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
53431744 |
T |
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| Q |
251 |
tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac |
347 |
Q |
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| T |
53431743 |
cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc |
53431644 |
T |
|
| Q |
348 |
aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
397 |
Q |
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| T |
53431643 |
aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 458 - 550
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
458 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
550 |
Q |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 153 - 411
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
| Q |
153 |
gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg |
252 |
Q |
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| T |
48373873 |
gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg |
48373972 |
T |
|
| Q |
253 |
gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa |
349 |
Q |
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| T |
48373973 |
gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa |
48374072 |
T |
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| Q |
350 |
aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
411 |
Q |
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| T |
48374073 |
aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
160 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
211 |
Q |
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| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
362 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
407 |
Q |
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| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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