View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_14 (Length: 543)
Name: NF11635_low_14
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 32258529 - 32259034
Alignment:
| Q |
18 |
aataaaaggtatagcgtgttgaattcagtaccttatagacatctttaattagttaattccctcaacnnnnnnnt----tctttaattagttaatattagt |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
32258529 |
aataaaaggtatagcgtgtcgaattcagtaccttatagacatctttaattagttaattcccttaacaaaaaaaaaaaatctttaattagttaatattagt |
32258628 |
T |
|
| Q |
114 |
gtatgctacttttaagtaggatttctcaatattctatccatatagaacaaacgcgttatacattttactaaaatagcaatgttctaactttaggttaata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258629 |
gtatgctacttttaagtaggatttctcaatattctatccatatagaacaaaggcgttatacattttactaaaatagcaatgttctaactttaggttaata |
32258728 |
T |
|
| Q |
214 |
aagataatcagaaaaaagagcaaacacaagctaactattttttcttctttaaaataattttgagaaaaaagaataatttggacaagtatatcttctagct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258729 |
aagataatcagaaaaaagagcaaacacaagctaactattttttcttctttaaaataattttgagaaaaaagaataatttggacaagtatatcttctagct |
32258828 |
T |
|
| Q |
314 |
tcctattattcgtacctttgatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258829 |
tcctattattcgtacctttgatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaa |
32258928 |
T |
|
| Q |
414 |
ataccaaacgcgtgtc--tatcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtct |
511 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258929 |
ataccaaacgcgtgtctatatcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtct |
32259028 |
T |
|
| Q |
512 |
cctcca |
517 |
Q |
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|||||| |
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| T |
32259029 |
cctcca |
32259034 |
T |
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