View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_15 (Length: 529)
Name: NF11635_low_15
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 34591000 - 34591511
Alignment:
| Q |
1 |
ctaagcatggtcatctaagaaacaacctataataactctttccactactaaggcagagtacatggcaactgctagcagtgtatgtcatgtagtatggttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34591000 |
ctaagcatggtcatctaagaaacaacctataataactctttccactactgaggcagagtacatggcaactgctagcagtgtatgtcatgtagtatggttt |
34591099 |
T |
|
| Q |
101 |
taaggatcttagtttaaattcgaagtaattaaggggactgcatcaccattcactgtgacaatagttcatcaacaaagttgtcgaaaaatccagtcatgca |
200 |
Q |
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| T |
34591100 |
taaggatcttagtttaaattggaagtaattaaggggactgcatcaccattcactgtgacaatagttcatcaacaaagttgtcgaaaaatccagtcatgca |
34591199 |
T |
|
| Q |
201 |
tggaaggagtaaacacattgatgtcaggttccactttcttcgtgacttgaccaaagacagagtcattcaacttctgcattgttcatcacaagataaactg |
300 |
Q |
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| T |
34591200 |
tggaaggagtaaacacattgatgtcaggttccactttcttcgtgacttgaccaaagatagagtcattcaacttctgcattgttcatcacaagataaactg |
34591299 |
T |
|
| Q |
301 |
gctgacattatgaccaagccttttgagtttagtaacattctgcaaattgagagacaagcttggaatgtgcaaactgactagttataaggtcagtttaggg |
400 |
Q |
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| T |
34591300 |
gctgacattatgaccaagccttttgagtttagtaacattctgcaaattgagagacaagcttggaatgtgcaaactgactagttataaggtcagtttaggg |
34591399 |
T |
|
| Q |
401 |
gagaatatgtaggaagtgatacatcatatctattgttagttaattgttagttgtatcattctgtttattggttagtttgttatatagcttgcatcacaag |
500 |
Q |
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| T |
34591400 |
gagaatatgtaggaagtgatacatcatatctattgttagttaattgttagttgtatcattctgtttattggttagtttgttatatagcttgcatcacaag |
34591499 |
T |
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| Q |
501 |
caagttagttag |
512 |
Q |
| |
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|||||||||||| |
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| T |
34591500 |
caagttagttag |
34591511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 512
Target Start/End: Original strand, 11853644 - 11853867
Alignment:
| Q |
308 |
ttatgaccaagccttttgagtttagtaacattctgcaaattgagagacaagcttggaatgtgcaaact--------------gactagttataaggtcag |
393 |
Q |
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| T |
11853644 |
ttatgaccaagccttt-gagtttagaaacattctccagattgagagacaagcttggactgtgcaaactggaattgctaaatagacttgttataagttcag |
11853742 |
T |
|
| Q |
394 |
tttaggggagaatatg-taggaagtgatacatcatatctattgttagttaattgttagttgtatcattctgtttattggttagtt------tgttatata |
486 |
Q |
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| T |
11853743 |
tttaggggaggatatgttaggaagt-attaactttgtccgttgttagttaattgttagttgaatcattctgtttgttagttagtttggtaatggtagatg |
11853841 |
T |
|
| Q |
487 |
gcttgcatcacaagcaagttagttag |
512 |
Q |
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| T |
11853842 |
gcttgcatcacaagcaagttagttag |
11853867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 34589241 - 34589289
Alignment:
| Q |
462 |
tgtttattggttagtttgttatatagcttgcatcacaagcaagttagtt |
510 |
Q |
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| T |
34589241 |
tgtttgttggttagtttgttagatagcttgcaacacaagcaaattagtt |
34589289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 9579545 - 9579478
Alignment:
| Q |
178 |
ttgtcgaaaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttccactttcttcgtga |
245 |
Q |
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| T |
9579545 |
ttgtcaaaaaatccagttctacatggaagaagtaaacacattgatgtgaggtttcattttctccgtga |
9579478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 1374140 - 1374201
Alignment:
| Q |
175 |
aagttgtcgaaaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttccactt |
236 |
Q |
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| T |
1374140 |
aagttgtccaaaaatcctgttatgcacggaagaagcaaacacatcgatgtgaggttccactt |
1374201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 20545384 - 20545464
Alignment:
| Q |
156 |
tgacaatagttcatcaacaaagttgtcgaaaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttccactt |
236 |
Q |
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| T |
20545384 |
tgacaatagctcatcaataaagctatctaagaatccagtcatgcatggtagatgcaaacatatagatgtcaggtttcactt |
20545464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 16866417 - 16866499
Alignment:
| Q |
154 |
tgtgacaatagttcatcaacaaagttgtcgaaaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttccactt |
236 |
Q |
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| T |
16866417 |
tgtgataatagctcatcaataaagctatctaagaatccagtcatgcatggaagatgcaaacacatagatctcaggtttcactt |
16866499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 45345409 - 45345457
Alignment:
| Q |
185 |
aaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttcca |
233 |
Q |
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| T |
45345409 |
aaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttcca |
45345457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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