View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_17 (Length: 504)
Name: NF11635_low_17
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 45404147 - 45404629
Alignment:
| Q |
16 |
ggttcatgatgggagagatcagtttcaaattcaatgctgttttcactgctctcaatcttagaagcataacaccctttgttctttttatgactagctctat |
115 |
Q |
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| T |
45404147 |
ggttcatgatgggagagatcagtttcaaattcaatgctgttttcactgctctcaatcttagaagcaaaacaccctttgttctttttatgactagctctat |
45404246 |
T |
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| Q |
116 |
gacctccaagagcttgataagaatgaaagattttgttacaagtagtacactcaaactttcctctcttattaaaattcttgataaattcatcttcatgatc |
215 |
Q |
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| T |
45404247 |
gacctccaagagcttgataagaatgaaagattttgttacaagtagtacactcaaactttcctctcttattaaaattcttgataaattcatcttcatgatc |
45404346 |
T |
|
| Q |
216 |
atgatgagggttgttcacagaactccttatagtagctgactttgatagaactgattctgttccattgactctgcttttcccattttcaacttctgaatct |
315 |
Q |
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| T |
45404347 |
atgatgagggttgttcacagaactccttatagtagctgactttgatagaactgattctgttccattgactctgcttttcccattttcaacttctgaatct |
45404446 |
T |
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| Q |
316 |
tccaatgtagacagataatcaagctcagattttgttgatttgagaaaccctttgatggaaactccagttttgatcatcttgaatcctttttcagtatcca |
415 |
Q |
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| T |
45404447 |
tccaatgtagacagataatcaagctcagattttgtggatttgagaaaccctttgatggaaactccagttttgatcatcttgaatcctttttcagtatcca |
45404546 |
T |
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| Q |
416 |
aaatctctaaacttttccctttgaacttgaaattcttggaaacagaattgcctaattcatacttcttgttctccctatgcttc |
498 |
Q |
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| T |
45404547 |
aaatctctaaacttttccctttgaacttgaaattcttggaaacagaattgcctaactcatacttcttgttctcactttgcttc |
45404629 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 7233840 - 7233919
Alignment:
| Q |
100 |
ttatgactagctctatgacctccaagagcttgataagaatgaaagattttgttacaagtagtacactcaaactttcctct |
179 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||| ||||| |||||||| |
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| T |
7233840 |
ttatgactagctctatgtcctccaagagcttgataagattgaaattttttgttgcaagtagcacattcaaattttcctct |
7233919 |
T |
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