View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_low_18 (Length: 502)
Name: NF11635_low_18
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_18 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 38707873 - 38707388
Alignment:
| Q |
1 |
cttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
38707873 |
cttagcaagttctgttttaccaacactatttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctc-gatctcactac |
38707775 |
T |
|
| Q |
101 |
agccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707774 |
agccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactaga |
38707675 |
T |
|
| Q |
201 |
cgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707674 |
cgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcag |
38707575 |
T |
|
| Q |
301 |
tgctaccttcaagattttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707574 |
tgctaccttcaagattttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttca |
38707475 |
T |
|
| Q |
401 |
gccttcgaatctcatcaatcctctctttctctttgttatactgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
487 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38707474 |
gccttcaaatctcatcaatcctctctttctctttgttatactgcatcttcagatgtcgaagcttgtctcttaaattttcaagttctt |
38707388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 10046081 - 10045741
Alignment:
| Q |
1 |
cttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| || |||| ||||| || || ||||| |
|
|
| T |
10046081 |
cttagcaagttctgttttaccgacaccagttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctc-gaccttactac |
10045983 |
T |
|
| Q |
101 |
agccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactaga |
200 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||| ||| | |
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|
| T |
10045982 |
agccccagcgacagctttaactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaa |
10045883 |
T |
|
| Q |
201 |
cgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcag |
300 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
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|
| T |
10045882 |
cgagtcactggtataccggtccatcggctaacaacctcagcaatttgatctggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcag |
10045783 |
T |
|
| Q |
301 |
tgctaccttcaagattttttattgcattttccaccttttcaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10045782 |
tgctaccttcaagattttttattgcattttccacctcttcaa |
10045741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 487
Target Start/End: Complemental strand, 10045708 - 10045561
Alignment:
| Q |
342 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtat--gtttcagccttcgaatctcatcaatcctctctttctctttgttat |
439 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10045708 |
agatcataccgcctctcagcctcttgtagtgcaaagaggagctcttcacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatat |
10045609 |
T |
|
| Q |
440 |
actgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
487 |
Q |
| |
|
||| |||||||||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
10045608 |
acttcatcttcagaggctgaagcttgtctcttaaattgtcaagttctt |
10045561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 45467930 - 45467594
Alignment:
| Q |
5 |
gcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagcc |
104 |
Q |
| |
|
||||| || ||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
45467930 |
gcaagctcagttttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctctt-gatctcaatacagcc |
45467832 |
T |
|
| Q |
105 |
ccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgag |
204 |
Q |
| |
|
|||||| | | ||||| ||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||| |||||||| | || | || |
|
|
| T |
45467831 |
tcagcaacagcattaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctag |
45467732 |
T |
|
| Q |
205 |
tcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgct |
304 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||| ||||||||||| |
|
|
| T |
45467731 |
tcactggtataccagtccatcggctaacaacctcggctatttggtccggtccaactgtttccgtcaacattaagttctcatccgtgttcccatcagtgct |
45467632 |
T |
|
| Q |
305 |
accttcaagattttttattgcattttccaccttttcaa |
342 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
45467631 |
accttcaagatttttaattgcagtttccacctcttcaa |
45467594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 342 - 470
Target Start/End: Complemental strand, 45467561 - 45467431
Alignment:
| Q |
342 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctctttgttat |
439 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45467561 |
agatcataccgcctctctgcctcctgtagtgcaaagaggagctcttcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactat |
45467462 |
T |
|
| Q |
440 |
actgcatcttcagatgttgaagtttgtctct |
470 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| |
|
|
| T |
45467461 |
acttcatcttcagaggttgaagcttgtctct |
45467431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 42449953 - 42450229
Alignment:
| Q |
1 |
cttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||| | |||| ||| |
|
|
| T |
42449953 |
cttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccg-cctcaatac |
42450051 |
T |
|
| Q |
101 |
agccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcact-ag |
199 |
Q |
| |
|
|| ||||| | || ||||| || ||||||||||| ||||| |||| || ||||||||||||||| ||||||||||| ||||||| |||| || |
|
|
| T |
42450052 |
agtgttagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcatttt-cactaag |
42450150 |
T |
|
| Q |
200 |
acgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaag |
278 |
Q |
| |
|
|| | ||| ||| |||| ||| || ||||||||||| | |||| |||||||| ||||||||| ||||| ||||||| |
|
|
| T |
42450151 |
tcgggacactggtatacccgtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaag |
42450229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 742698 - 742887
Alignment:
| Q |
2 |
ttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactaca |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| | ||||| ||||| | || | |||| |
|
|
| T |
742698 |
ttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctctc-caccttaataca |
742796 |
T |
|
| Q |
102 |
gccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
192 |
Q |
| |
|
|| ||||| | || |||||||| |||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
742797 |
gcgttagcaacgtcatttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcatttt |
742887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 434
Target Start/End: Original strand, 42450316 - 42450408
Alignment:
| Q |
344 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctcttt |
434 |
Q |
| |
|
||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
42450408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 43064731 - 43064913
Alignment:
| Q |
5 |
gcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagcc |
104 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
43064731 |
gcaagttcagttttaccaacaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctct-tgatctcaatacagcc |
43064829 |
T |
|
| Q |
105 |
ccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattt |
191 |
Q |
| |
|
|||||| ||| |||| || ||||| |||||| ||||| ||||||||| | |||| |||||||| ||| |||||||| |||||| |
|
|
| T |
43064830 |
tcagcaagaacattaattgtttggtattgtcctgcaact---ctgtgcaatctatcacaaagtccaatcaatctttctttctcattt |
43064913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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