View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_19 (Length: 495)
Name: NF11635_low_19
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Original strand, 3613796 - 3614267
Alignment:
| Q |
17 |
ataatgatctctttatccctttccaaagaagcatgggacaaaattatgtgtcaaaaatgtcaaatatgaaattaatattgtacaaatacaagtcagttga |
116 |
Q |
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| T |
3613796 |
ataatgatctctttatccctttccaaagaagcatgggacaaaattatgtgtcaaaaatgtcaaatatgaaattaatattgtacaaatacaagtcaattga |
3613895 |
T |
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| Q |
117 |
tgtagttatagataagttgaaagagaaagggctgccgcaggtcacttagacttcacaattaaaggtttcaaatcagttattatgtagtagnnnnnnnnnn |
216 |
Q |
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| T |
3613896 |
tgtagttatagataagttgaaagagaaagggctgccgcaggtcacttagacttcacaattaaaggtttcaaatcagttattatgtagtag--aaaaaaaa |
3613993 |
T |
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| Q |
217 |
nnnnnnnnnnntcagtcgtgataactagggtgtgtgtggattggattgaataagttttaagaagaaaaacctatcaagaaaatgagttttgagaagaaaa |
316 |
Q |
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| T |
3613994 |
ctaaaataaaatcagtcgtgataactagggtgtgtgtagattggattgaataagttttgagaagaaaaacctatcaagaaaatgagttttgagaagaaaa |
3614093 |
T |
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| Q |
317 |
tgtcatctagtataatt--tatttggttttgactagatcatccaatcaatttgataactagagtgttc--atgtatttgatttgattaattcaaatttgg |
412 |
Q |
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| T |
3614094 |
tgtcatccaatcaatttagtatttggttttgactagatcatccaatcaatttgataactagagtgttcatatgtatttgattt--ttaattcaaatttgg |
3614191 |
T |
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| Q |
413 |
attggatttgatcggttttcattctgggaaccaaaaatcaattcaatcaatttaaaaagaatcacttttcttctct |
488 |
Q |
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| T |
3614192 |
aacggatttgattggttttcattctgggaaccaaaaatcaattgaattaatttaaaaagaatcacttttcttctct |
3614267 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 469
Target Start/End: Complemental strand, 34175808 - 34175748
Alignment:
| Q |
409 |
ttggattggatttgatcggttttcattctgggaaccaaaaatcaattcaatcaatttaaaa |
469 |
Q |
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| T |
34175808 |
ttggattggattggatcggtttatactaagggaaccaaaaatcaatccaatccatttaaaa |
34175748 |
T |
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