View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_20 (Length: 492)
Name: NF11635_low_20
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 49686666 - 49686216
Alignment:
| Q |
20 |
gcctaatcagcaaaccgttgattatcctagtttcaagcttgttatcgtcggtgacggtggcactggtaaaccattttttcttcattttatcacatcgatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49686666 |
gcctaatcagcaaaccgttgattatcctagtttcaagcttgttatcgtcggtgacggtggcactggtaaaccatttt-----------atcacatcgatt |
49686578 |
T |
|
| Q |
120 |
cactctaaattctttaagataattgaaatcgtttgcaaccatgtgattacgatttgaactttatttttatcaacatttgcaggaaagacaactttcgtca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686577 |
cactctaaattctttaagataattgaaatcgtttgcaaccatgtgattacgatttgaactttatttttatcaacatttgcaggaaagacaactttcgtca |
49686478 |
T |
|
| Q |
220 |
agaggcatcttactggagagttcgagaagaaatatgaacgtaagattcattttctaatttagggttattatatgcatgttattcttaattaatacgcgtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686477 |
agaggcatcttactggagagttcgagaagaaatatgaacgtaagattcattttctaatttagggttattatatgcatgttattcttaattaatacgcgtt |
49686378 |
T |
|
| Q |
320 |
taatcgttgatttgtgattgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggaaagattcggttctactgctggga |
419 |
Q |
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| T |
49686377 |
taatcgttgatttgtgattgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggaaagattcggttctactgctggga |
49686278 |
T |
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| Q |
420 |
tactgctggacaagagaagtttggtggcctcagagatggatactagtaagtctcctcttcat |
481 |
Q |
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| T |
49686277 |
tactgctggacaagagaagtttggtggcctcagagatggatactagtaagtctcctcttcat |
49686216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 334 - 481
Target Start/End: Complemental strand, 49691886 - 49691739
Alignment:
| Q |
334 |
tgattgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggaaagattcggttctactgctgggatactgctggacaag |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
49691886 |
tgattgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaag |
49691787 |
T |
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| Q |
434 |
agaagtttggtggcctcagagatggatactagtaagtctcctcttcat |
481 |
Q |
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| T |
49691786 |
agaagtttggtggcctcagagatggatactagtaagtttcctcttcat |
49691739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 337 - 481
Target Start/End: Complemental strand, 49697022 - 49696878
Alignment:
| Q |
337 |
ttgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggaaagattcggttctactgctgggatactgctggacaagaga |
436 |
Q |
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| T |
49697022 |
ttgtaaacagctacaattggtgtggaagtgcatccattggatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagaga |
49696923 |
T |
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| Q |
437 |
agtttggtggcctcagagatggatactagtaagtctcctcttcat |
481 |
Q |
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| T |
49696922 |
agtttggtggtctcagagatggatactagtaagtttcctcatcat |
49696878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 49697193 - 49697101
Alignment:
| Q |
194 |
atttgcaggaaagacaactttcgtcaagaggcatcttactggagagttcgagaagaaatatgaacgtaagattcattttctaatttagggttat |
287 |
Q |
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| T |
49697193 |
atttgcaggaaaaacaacattcgtgaagaggcatcttactggagagtttgagaagaaatatgaacgtaagtttcgtttt-taatttagggttat |
49697101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 49692044 - 49691958
Alignment:
| Q |
200 |
aggaaagacaactttcgtcaagaggcatcttactggagagttcgagaagaaatatgaacgtaagattcattttctaatttagggttat |
287 |
Q |
| |
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|||||||||||| || || |||||||||||||| ||||| || ||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
49692044 |
aggaaagacaacatttgtgaagaggcatcttaccggagaatttgagaagaaatatgaacgtaagattcctttt-taatttagggttat |
49691958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 49697370 - 49697307
Alignment:
| Q |
24 |
aatcagcaaaccgttgattatcctagtttcaagcttgttatcgtcggtgacggtggcactggta |
87 |
Q |
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| T |
49697370 |
aatcagcaaaccgttgattaccctagcttcaagcttgtcatcgtcggcgatggtggcacaggta |
49697307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 49692250 - 49692187
Alignment:
| Q |
24 |
aatcagcaaaccgttgattatcctagtttcaagcttgttatcgtcggtgacggtggcactggta |
87 |
Q |
| |
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|||||||||||||||||||| || || ||||||||||| |||||||| || || |||||||||| |
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| T |
49692250 |
aatcagcaaaccgttgattacccgagcttcaagcttgtcatcgtcggcgatggcggcactggta |
49692187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 481
Target Start/End: Original strand, 45403323 - 45403454
Alignment:
| Q |
352 |
attggtgtggaagtgcatccattggatttcttcacaaactgcggaaagattcggttctactgctgggatactgctggacaagagaagtttggtggcctca |
451 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||| |||||| | |||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
45403323 |
attggtgtggaagtgcatccattggatgtcttcacaaactacggcaagatttgcttctactgttgggatactgctggataggagaagtttggtggcctca |
45403422 |
T |
|
| Q |
452 |
gagatgg--atactagtaagtctcctcttcat |
481 |
Q |
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||||||| ||| ||||||||||||||||||| |
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| T |
45403423 |
gagatggatatattagtaagtctcctcttcat |
45403454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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