View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_25 (Length: 466)
Name: NF11635_low_25
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 33860978 - 33861426
Alignment:
| Q |
11 |
cagagactacggtttcgtcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttaca |
110 |
Q |
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| T |
33860978 |
cagagactacggtttcgtcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttaca |
33861077 |
T |
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| Q |
111 |
atttccagggactatagagatgtcttagcatgtgtgcacgatggttgtgagaaaaccaccttggcaacatgagttatgtctctgcattagttcactgatg |
210 |
Q |
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| T |
33861078 |
atttccagggactatagagatgtcttggcctgtgtgcacgatggttgtgagaaaaccaccttggcaacatgagttatgtctctgcattagttcactgatg |
33861177 |
T |
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| Q |
211 |
tagtcttgaaatggaataaagtatttcg------------aaataaatgaaggctattatgttcaatctccaattctcatgatcatttagataattatac |
298 |
Q |
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| T |
33861178 |
tagtcttgaaatgg---aaagtatttcgaaataaattaataaataaatgaaggctattatgttcaatctccaattctcatgatcatttagatatttatac |
33861274 |
T |
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| Q |
299 |
atataaatcaccatcataacaaagaaagcaatcaaatctgtttcgaactttgataatgtacaaggaaattagggtagcaagaattatatgtgacccaatc |
398 |
Q |
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| T |
33861275 |
atataaatcaccatcataacaaagaaagcaatcaaatctgtttcgaactttgataatgtacaaggaaattagggtagcaagaattatatgtgacccagtc |
33861374 |
T |
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| Q |
399 |
aaatgtactataactagcaaggcaagaattctaaggaaagtgggggtatatc |
450 |
Q |
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| T |
33861375 |
aaatgtattctaactagcaaggcaagaattctaaggaaagtgggggtatatc |
33861426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 33871315 - 33871540
Alignment:
| Q |
11 |
cagagactacggtttcgtcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttaca |
110 |
Q |
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| T |
33871315 |
cagagactacggtttcgtcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttaca |
33871414 |
T |
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| Q |
111 |
atttccagggactatagagatgtcttagcatgtgtgcacgatggttgtgagaaaaccaccttggcaacatgagttatgt-ctctgcattagttcactgat |
209 |
Q |
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| T |
33871415 |
atttccagggactatagagatgtcttggcctgtgtgcacgatggttgtgagaaaaccaccttggcactctgaattatgtagtctacattagaac-ttgat |
33871513 |
T |
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| Q |
210 |
gtagtcttgaaatggaataaagtattt |
236 |
Q |
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| T |
33871514 |
gtagtcttgaaatgaaataaaatattt |
33871540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 33875860 - 33876035
Alignment:
| Q |
14 |
agactacggtttcgtcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttacaatt |
113 |
Q |
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| T |
33875860 |
agactatggttttggcaaactgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaagtctacgactcttttaccatt |
33875959 |
T |
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| Q |
114 |
tccagggactatagagatgtcttagcatgtgtgcacgatggttgtgagaaaaccaccttggcaacatgagttatgt |
189 |
Q |
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| T |
33875960 |
tccagggactatagagatgtcttggcctgtgtgcacgatggttgtgtgaaaaccaccttgccaacctgagttatgt |
33876035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 42785329 - 42785440
Alignment:
| Q |
34 |
tgacagcattcaatcactcatatctcttgtttgagtacaagaaaagtagtgatggaaaggtttatgactcttttacaatttccagggactatagagatgt |
133 |
Q |
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|||||||||||||||| |||| ||| | ||||| |||||||||||||| |||||||| ||||||||||||||||| |||| ||||| || | |||||| |
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| T |
42785329 |
tgacagcattcaatcattcatccctcctctttgaatacaagaaaagtagcgatggaaatgtttatgactcttttaccgtttcaagggattacaaagatgt |
42785428 |
T |
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| Q |
134 |
cttagcatgtgt |
145 |
Q |
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| T |
42785429 |
cttggcatgtgt |
42785440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 26412474 - 26412522
Alignment:
| Q |
60 |
ttgtttgagtacaagaaaagtagtgatggaaaggtttatgactctttta |
108 |
Q |
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| T |
26412474 |
ttgttagagtacaagaagagtagtgatggacaagtttacgactctttta |
26412522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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