View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_low_26 (Length: 457)
Name: NF11635_low_26
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 4347145 - 4346701
Alignment:
| Q |
1 |
caatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagttctttcctatggcatgtatatgacaggataatgtagttcttgcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4347145 |
caatgcgagcatcctgacacaacaataaaaaagatgcatgctaaacaaaatagttctttcctatggcatgtatatgacaggataatgtagtttttgcctg |
4347046 |
T |
|
| Q |
101 |
acatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaactagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4347045 |
acatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaactagc |
4346946 |
T |
|
| Q |
201 |
gacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346945 |
gacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttgga |
4346846 |
T |
|
| Q |
301 |
aagccttctctacaatatttggaaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcc |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346845 |
aagccttctctacaa-atttggaaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcc |
4346747 |
T |
|
| Q |
401 |
tcttggaagaacattcattttcatcaccaccaacaataacattcat |
446 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346746 |
tcttggaagagcattcattttcatcaccaccaacaataacattcat |
4346701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 4363432 - 4363264
Alignment:
| Q |
142 |
aaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaactagcgacttgattgggataatttaaaccatgtcttagactcacat |
241 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||| |||| | |||||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
4363432 |
aaggaaaactaaactctatacgcacacact-ataagaatacattaaagatcaaactagtgacttgattgggagaatttaaaacatgtcttagactcacat |
4363334 |
T |
|
| Q |
242 |
agtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttggaaagccttctct |
311 |
Q |
| |
|
| |||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4363333 |
aatcacagaggaattcttcttgaagtgtactgagattgctgcgattgtttgcatttggaaaaccttctct |
4363264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 4363006 - 4362892
Alignment:
| Q |
330 |
tctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
429 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4363006 |
tctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaagagcattcattttcatcacca |
4362907 |
T |
|
| Q |
430 |
ccaacaataacattc |
444 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4362906 |
ccaacaataacattc |
4362892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 4363521 - 4363463
Alignment:
| Q |
88 |
tagttcttgcctgacatttatttacttaatgcaatactgttgtctcctaaatcaaagga |
146 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4363521 |
tagttctttcctgacatttatttacttaatgcaatattgttgtctcctacatcaaagga |
4363463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 4122501 - 4122594
Alignment:
| Q |
343 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccaccaacaa |
436 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || ||||||||| |||| | |||||||| || |||||||||||| |||||||||||| |
|
|
| T |
4122501 |
tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcagcaccaccaacaa |
4122594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4363571 - 4363510
Alignment:
| Q |
1 |
caatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagttctttcct |
62 |
Q |
| |
|
|||||| ||||||||| |||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
4363571 |
caatgcaagcatcctgccacaccaatgaaaaagatgcatgctaaacaaaatagttctttcct |
4363510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 4337337 - 4337250
Alignment:
| Q |
343 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac |
430 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||| | |||||||||| |||| |||||||||| || ||||||||||| |||||||| |
|
|
| T |
4337337 |
tttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccac |
4337250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 4319153 - 4319238
Alignment:
| Q |
343 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacc |
428 |
Q |
| |
|
||||||||||| ||| |||| | | |||||||||| | ||||||||| |||| |||||| ||| || |||||||||||||||||| |
|
|
| T |
4319153 |
tttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcacc |
4319238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 4132482 - 4132571
Alignment:
| Q |
341 |
gctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac |
430 |
Q |
| |
|
||||||||||| | ||| |||| ||| ||| | ||| || |||||||||| ||| | |||||||| || |||||||||||||||||||| |
|
|
| T |
4132482 |
gctttcttcttctctgtttttgtttaaaatgacctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccac |
4132571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University