View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_low_27 (Length: 456)
Name: NF11635_low_27
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 41123862 - 41123433
Alignment:
| Q |
1 |
aattgtcttccctatcgctatagatgttggaaacttaaaaactcatatgactgcaaacagtttctccatctaatagtaagactccaaaccaccaattact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41123862 |
aattgtcttccctatggctatagatgttggaaacttaaaaactcatatgactgcaaacagtttctccatctaatagtaagactccaaaccatcaattact |
41123763 |
T |
|
| Q |
101 |
tagaatcacattcgagctatagagactccaccaattatacaaataggttatatcaatatcatacattgtagcaaagaactctgcatatatatatgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41123762 |
tagaatcacattcgagctatagagactccaccaattatacaaataggttatatcaatatcatacattgtagcaaagaactctgcat----atatggagaa |
41123667 |
T |
|
| Q |
201 |
ccacaggttgcaccatctgtgttagctttaaaccaactcattcaaggagatagagtgacatataacctcaatgatggaaggagacttttgccccttatta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41123666 |
ccacaggttgcaccatctgtgttagctttaaaccaactcattcaaggagatagagtgacatataacctcaatgatagaaggagacttttgccccttatta |
41123567 |
T |
|
| Q |
301 |
aagagaaacaacgagcacaaaatataccaagaatttacatcaaaaatgcataactatctctctaattagttatattaaaggttattggacactcccaatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41123566 |
aagagaaacaacgagcacaaaatataccaagaatttacatgaaaaatgcataactatctctc---ttagttatattaaaggttattggacactcccaatg |
41123470 |
T |
|
| Q |
401 |
gaggagcataagaagtgtataaagataaaggagagat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41123469 |
gaggagcataagaagtgtataaagataaaagagagat |
41123433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University