View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_low_28 (Length: 450)

Name: NF11635_low_28
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_low_28
NF11635_low_28
[»] chr1 (11 HSPs)
chr1 (144-396)||(49250248-49250488)
chr1 (123-306)||(269995-270175)
chr1 (164-280)||(14945436-14945549)
chr1 (144-230)||(49250029-49250114)
chr1 (164-280)||(14940194-14940307)
chr1 (164-280)||(14950201-14950314)
chr1 (164-280)||(14954442-14954555)
chr1 (144-271)||(14941553-14941679)
chr1 (144-271)||(14951560-14951686)
chr1 (144-271)||(14955801-14955927)
chr1 (41-96)||(269940-269994)
[»] chr8 (1 HSPs)
chr8 (187-273)||(8791002-8791088)
[»] chr7 (1 HSPs)
chr7 (190-253)||(6205758-6205819)
[»] chr2 (1 HSPs)
chr2 (27-106)||(32725757-32725835)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 144 - 396
Target Start/End: Complemental strand, 49250488 - 49250248
Alignment:
Q  144 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 243  Q
    ||||| |||| |||| ||||||||| ||||||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||     
T  49250488 ttgtacaagggattcgtcatttataagtttaaggatttattgt-actttcgttgtataagtggttgtaaagttgaccacatgtaaaaaattcaaattgaa 49250390  T
Q  244 gagtatcaatgaaatgaagttactttgttatcaaattcc-ttgatttcacttttctttctttctcttgatcaacaaaatagagtatcaataaagtaatca 342  Q
    ||||||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||           |||||||||||||    
T  49250389 gagtat-gatgaaatgaagttactttgttatcaaattcctttgatttcacatttctttctttcttttgatcaacaa-----------aataaagtaatca 49250302  T
Q  343 aaatatcaatgaaactggcacataattacaaatatcagtaaaaccattctctaa 396  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  49250301 aaatatcaatgaaactagcacataattacaaatatcagtaaaacctttctctaa 49250248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 269995 - 270175
Alignment:
Q  123 aggtggcacgcctagagagttttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacac 222  Q
    |||||||| ||||| |||||||||||||||| |||||||||  ||||||||||| |||| |||| | |||| |||||||||  |||||||||||||||||    
T  269995 aggtggcatgcctaaagagttttgtataagggattcatcat--ataggtttaagaatttgttttaa-tttaattgtatgagccgttgtaaagttgaacac 270091  T
Q  223 atgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaattccttgatttcacttttctttctttct 306  Q
    ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  270092 atgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattccttgatttcacgtttctttctttct 270175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 14945549 - 14945436
Alignment:
Q  164 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 263  Q
    |||||| |||||||||||||| | |||||||||||||  |||||||||| ||| ||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  14945549 ttatagatttaaggatttattgt-actttagttgtataggtggttgtaaggtt-aac-cgtgtaaaatattcaaattgaagagtatcgatgaaatgaagt 14945453  T
Q  264 tactttgttatcaaatt 280  Q
    ||||||||  |||||||    
T  14945452 tactttgtattcaaatt 14945436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 49250029 - 49250114
Alignment:
Q  144 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaa 230  Q
    |||| ||||| |||||||||| |||||||||| |||||||| | ||||||||||||| ||||||||||||||||| |||||||||||    
T  49250029 ttgtttaagggattcatcattaataggtttaatgatttattgt-actttagttgtattagtggttgtaaagttgaccacatgtaaaa 49250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 14940307 - 14940194
Alignment:
Q  164 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 263  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14940307 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14940211  T
Q  264 tactttgttatcaaatt 280  Q
    ||||||||  |||||||    
T  14940210 tactttgtattcaaatt 14940194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 14950314 - 14950201
Alignment:
Q  164 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 263  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14950314 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14950218  T
Q  264 tactttgttatcaaatt 280  Q
    ||||||||  |||||||    
T  14950217 tactttgtattcaaatt 14950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 14954555 - 14954442
Alignment:
Q  164 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 263  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14954555 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14954459  T
Q  264 tactttgttatcaaatt 280  Q
    ||||||||  |||||||    
T  14954458 tactttgtattcaaatt 14954442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 14941679 - 14941553
Alignment:
Q  144 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 243  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14941679 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14941583  T
Q  244 gag-tatcaatg-aaatgaagttactttgt 271  Q
    ||| |||  ||| |||||||||||||||||    
T  14941582 gagttatagatgaaaatgaagttactttgt 14941553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 14951686 - 14951560
Alignment:
Q  144 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 243  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14951686 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14951590  T
Q  244 gag-tatcaatg-aaatgaagttactttgt 271  Q
    ||| |||  ||| |||||||||||||||||    
T  14951589 gagttatagatgaaaatgaagttactttgt 14951560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 14955927 - 14955801
Alignment:
Q  144 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 243  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14955927 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14955831  T
Q  244 gag-tatcaatg-aaatgaagttactttgt 271  Q
    ||| |||  ||| |||||||||||||||||    
T  14955830 gagttatagatgaaaatgaagttactttgt 14955801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 269940 - 269994
Alignment:
Q  41 gtgaagggaaactctaaaatttgaagctgcagaatgtgtatttgatatgtaaaaaa 96  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  269940 gtgaagggaaactctaaaatttgaagttgcagaatgtgtattt-atatgtaaaaaa 269994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 8791002 - 8791088
Alignment:
Q  187 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgtta 273  Q
    |||||||||| |||  |||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8791002 tactttagttttatcggtggttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattactttgtta 8791088  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 6205758 - 6205819
Alignment:
Q  190 tttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaat 253  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  6205758 tttagttgta--agtggttgtaaagttgaccacatgtaaaacattcaaattgaagagtaccaat 6205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 32725757 - 32725835
Alignment:
Q  27 ctttaaaatgtgaagtgaagggaaactcta-aaatttgaagctgcagaatgtgtatttgatatgtaaaaaactagtggatc 106  Q
    ||||||||||||||||||||||||||  || ||| | ||||||||||| ||||||  | ||||||||| ||||| ||||||    
T  32725757 ctttaaaatgtgaagtgaagggaaaccttacaaaatggaagctgcagagtgtgta--tcatatgtaaagaactattggatc 32725835  T

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