View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_30 (Length: 434)
Name: NF11635_low_30
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 43 - 417
Target Start/End: Complemental strand, 2651613 - 2651238
Alignment:
| Q |
43 |
aaagtttcaaaaagaatgcatgcaggttgaaccttctgtggacacagagaaagtgagaggcattccaaggtttggtcaacatcctaacaaaaattggatt |
142 |
Q |
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| T |
2651613 |
aaagtttcaaaaagaatgcatgcaggttgaaccttctgtggacacagagaaagtgagaggcattccaaggtttggtcaacatcctaacaaaaattggatt |
2651514 |
T |
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| Q |
143 |
ggtgatnnnnnnnn--ttaacaaagtatcatgatcagaaaacttgcatgcatttaatttgttttaacatttaaaaagatgtttaaagtaacaaaaccaag |
240 |
Q |
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| T |
2651513 |
ggtgataaaaaaaaaattaacaaagtatcatgatcagaaaacttgcatgcattt-----gttttaacatttaaaaagatgtttaaagtaacaaaaccaag |
2651419 |
T |
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| Q |
241 |
ttgataatacaagcatgctattggtcctttttgtgaacaacttttttatttagtagttacaaaacaatata----tatagattcagaagtattgcagaat |
336 |
Q |
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| T |
2651418 |
ttgataatacaagcatgctattggtcctttttgtgaacaacttttttatttagtagttacaaaacaatatatatatatagattcagaagtattgcagaat |
2651319 |
T |
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| Q |
337 |
catcaattgggtgaaacttctgatgcttttgctcaagtgagaaaaatccaacaatactgagcaataaagaggaaaatgttt |
417 |
Q |
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| T |
2651318 |
catcaattgggtgaaacttctgatgcttttgctcaagtgagaaaaatccaacaatactgagcaataaagaggaaaatgttt |
2651238 |
T |
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