View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_32 (Length: 404)
Name: NF11635_low_32
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 31182381 - 31182764
Alignment:
| Q |
7 |
ctattgtatctagatttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31182381 |
ctattgtatctagatttaggaggcaacaatttcgttggcactcctattcctcctgtgattggaaaattgaacaaattatggtttctatcaattcaaaaat |
31182480 |
T |
|
| Q |
107 |
gtaaccttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaac |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
31182481 |
gtaaccttattggttctattccaaaagaaattgggtttttgacaaaccttacttatattgatttgtcaaacaaccttctttctggtgttatttctgaaac |
31182580 |
T |
|
| Q |
207 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
306 |
Q |
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| T |
31182581 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
31182680 |
T |
|
| Q |
307 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcactt |
390 |
Q |
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| T |
31182681 |
actatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcactt |
31182764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 31138666 - 31139049
Alignment:
| Q |
7 |
ctattgtatctagatttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31138666 |
ctattgtatctagatttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaat |
31138765 |
T |
|
| Q |
107 |
gtaaccttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaac |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
31138766 |
gtaaccttattggttctattccaaaagaaattgggtttttgacaaaccttactcttattgatttgtcaaacaacattctttctggtgttattcctgaaac |
31138865 |
T |
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| Q |
207 |
cataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaac |
306 |
Q |
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|||||| |||||||| ||||||||| ||| |||| ||| ||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
31138866 |
catagggaacatgagcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgacc |
31138965 |
T |
|
| Q |
307 |
attatcttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatcagcttgcactt |
390 |
Q |
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| T |
31138966 |
ttgatctacctttttaacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcactt |
31139049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 31101295 - 31101654
Alignment:
| Q |
13 |
tatctagatttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaacc |
112 |
Q |
| |
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||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| |||||| ||| |||| ||||| | || ||| || |
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| T |
31101295 |
tatctagatttaggaggtaacaatttttctggtggtcccattcctcctgagattggaaaattgaagaaattaaggtatctagcaattacacaaggtagcc |
31101394 |
T |
|
| Q |
113 |
ttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccatagg |
212 |
Q |
| |
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| ||||||| |||||| ||||||| || || |||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||| |
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| T |
31101395 |
tagttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccatagg |
31101494 |
T |
|
| Q |
213 |
caacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatc |
312 |
Q |
| |
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|||||||| ||||||||| ||| || || ||||||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | | ||| |
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| T |
31101495 |
gaacatgagcaaattaaatcaactcatgtttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatc |
31101594 |
T |
|
| Q |
313 |
ttactttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaat |
372 |
Q |
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| ||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
31101595 |
tacctttataacatgagtctttctggttcaatccctgattcagtacaaaacttgattaat |
31101654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 49 - 350
Target Start/End: Original strand, 31056896 - 31057197
Alignment:
| Q |
49 |
cctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttga |
148 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| |||| | ||| ||||||||||| ||||||| | ||||| |||||| ||||||| |||||||||| |
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| T |
31056896 |
cctattcctcctgagattggtaaattaaacaatttattgcatcttgcaattcaaaaaagtaacctagtcggttccattccacaagaaattgggtttttga |
31056995 |
T |
|
| Q |
149 |
caaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaa |
248 |
Q |
| |
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|||| ||| | ||||||||||||||||| ||| | | ||||||| |||||||||||||||||| ||| |||| |||||| || |||| | |||| ||| |
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| T |
31056996 |
caaatcttgcatatattgatttgtcaaaaaactctctatctggtggtattcctgaaaccatagggaacttgagcaaattagatacacttgttctttctaa |
31057095 |
T |
|
| Q |
249 |
taacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatcttacttt-ataacatgagtctttctggttcaatccc |
347 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| | | || |||||| ||||||| ||||||||||||||||||| |
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| T |
31057096 |
taacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactc-tactttgataacataggtctttctggttcaatccc |
31057194 |
T |
|
| Q |
348 |
tga |
350 |
Q |
| |
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||| |
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|
| T |
31057195 |
tga |
31057197 |
T |
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