View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_34 (Length: 395)
Name: NF11635_low_34
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 37323239 - 37323612
Alignment:
| Q |
17 |
cagagataatttatattgacatctggattgtgtgattgttaaccacaaacaatccaaatttaaagaagtatgaatttcatctataattccaccactgtga |
116 |
Q |
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| T |
37323239 |
cagagataatttatattgacatctggattgtgtgattgttaaccacaaacaatccaaatttaaagaagtatgaatttcatctataattccaccactgtga |
37323338 |
T |
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| Q |
117 |
gagaattataaaaggattttgnnnnnnnn---------atctctaatttcagtcactaatttaaattctgaagtatcaaaataaatcaactgagcctctt |
207 |
Q |
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| T |
37323339 |
gagaattataaaaggattttttttttttttttttttttatctctaatttcagtcactaatttaaattctgaagtatcaaaataaatcaactgaccctctt |
37323438 |
T |
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| Q |
208 |
tagtcttgacaaattttaaattttctaatttgagttctactaattgtttgtaggtatttcaacgagaaagacaaaatgggcattatggagtgattgcata |
307 |
Q |
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| T |
37323439 |
tagtcctgacaaatttttaattttctaatttgagttctactaattgtttgtaggtatttcaacgagaaagacaaaatgggcattatggtgtgattgcata |
37323538 |
T |
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| Q |
308 |
tgtgattgggaacactttttcgtcaattccattcattttattggttacaataattccagcagctataacttatt |
381 |
Q |
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| T |
37323539 |
tgtgattgggaacactttttcgtcaattccattcattttattggttacaataattccagcagctataacttatt |
37323612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 37332666 - 37332821
Alignment:
| Q |
226 |
aattttctaatttgagttctactaattgtttgtaggtatttcaacgagaaagacaaaatgggcattatggagtgattgcatatgtgattgggaacacttt |
325 |
Q |
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| T |
37332666 |
aattttctaatttgaattctactaattgtttgtaggtatttcaacgagaaagacaaaatgggcattatggagtgattgcatatgtgattgggaacacttt |
37332765 |
T |
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| Q |
326 |
ttcgtcaattccattcattttattggttacaataattccagcagctataacttatt |
381 |
Q |
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| T |
37332766 |
ttcatcaataccattcattttattggttacaataattccagcagctataacttatt |
37332821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 19542917 - 19542785
Alignment:
| Q |
249 |
aattgtttgtaggtatttcaacgagaaagacaaaatgggcattatggagtgattgcatatgtgattgggaacactttttcgtcaattccattcattttat |
348 |
Q |
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| T |
19542917 |
aattgttttcaggtatttcaacgagaaagacagaacgggcattatggtgtgattgcttatgtgattgggaacactttttcctcgattccgttcatttttt |
19542818 |
T |
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| Q |
349 |
tggttacaataattccagcagctataacttatt |
381 |
Q |
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| T |
19542817 |
tggttacaatgattcccgcagctataacttatt |
19542785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 19543037 - 19542980
Alignment:
| Q |
147 |
tctctaatttcagtcactaatttaaattctgaagtatcaaaataaatcaactgagcct |
204 |
Q |
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| T |
19543037 |
tctctaattttggtcatttatttaaattctgaaatatcagaataaatcaattgagcct |
19542980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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