View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_35 (Length: 394)
Name: NF11635_low_35
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 47039468 - 47039825
Alignment:
| Q |
1 |
aagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47039468 |
aagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttt |
47039567 |
T |
|
| Q |
101 |
tgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttctgtgttctgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
47039568 |
tgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcgtctcaagaattctagggtttctgggttctgtt |
47039667 |
T |
|
| Q |
201 |
ctagcagaaatgaaatgtagcactctgatgaagtgaatggttttgtactgcacttagt----------------------tgaatatatacatgtagctt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47039668 |
ctagcagaaatgaaatgtagcactctgatgaagtgaatggttttgtactgcacttagttgaatatgaatggaaaacattatgaatatatacatgtagctt |
47039767 |
T |
|
| Q |
279 |
ctattaagcttttattgttcattcgctttaatctggaatctgtggttgttgatacttg |
336 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47039768 |
ctattaagcttttattgttcattcgctttaatctgtaatctgtggttgttgatacttg |
47039825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 47033184 - 47033373
Alignment:
| Q |
1 |
aagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttt |
100 |
Q |
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| T |
47033184 |
aagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactcagcaagcttttaggaactgtgaccattgctaatggtggtgttc |
47033283 |
T |
|
| Q |
101 |
tgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttct |
190 |
Q |
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| T |
47033284 |
tgcccaatattcatcagactttgcttcctaagaaggttggaaagggcaaaggagaaattggatctgcttctcaagaattttagggtttct |
47033373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 44071924 - 44071725
Alignment:
| Q |
1 |
aagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttt |
100 |
Q |
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||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
44071924 |
aagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaaccattgctaatggtggtgttt |
44071825 |
T |
|
| Q |
101 |
tgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttctgtgttctgtt |
200 |
Q |
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||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
44071824 |
tgcccaatattcatcagacattgcttcctaagaaagttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtgtgctgtt |
44071725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 47035436 - 47035261
Alignment:
| Q |
25 |
attcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaatattcatcagactttgc |
124 |
Q |
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||||| ||||| || |||||||| || ||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
47035436 |
attcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcctaacattcatcagactttgc |
47035337 |
T |
|
| Q |
125 |
tccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttctgtgttctgtt |
200 |
Q |
| |
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| || |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
47035336 |
tgccaaagaagtctgggaagggaaaagccgaaattggatctgcttctcaagaattttagggtttatgtgatctgtt |
47035261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 37367644 - 37367515
Alignment:
| Q |
10 |
attgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaata |
109 |
Q |
| |
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||||||||||||||| |||| || || ||||||||||| || ||| | ||||| | |||||| |||||| ||||||||||||||||||||||| || | |
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| T |
37367644 |
attgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaaca |
37367545 |
T |
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| Q |
110 |
ttcatcagactttgctccctaagaaggttg |
139 |
Q |
| |
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|||| ||||||||| | || |||||||||| |
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| T |
37367544 |
ttcaccagactttgttgccaaagaaggttg |
37367515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 34615589 - 34615692
Alignment:
| Q |
10 |
attgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaata |
109 |
Q |
| |
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||||| ||||| |||||||| | || ||||||||||| || ||| | ||||||||| | || ||| ||||||||||||||||||||| ||||||||| |
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| T |
34615589 |
attgtgccaagacacattcaattggctgtgaggaacgatgaagaattgagcaagcttcttggtgatgttaccattgctaatggtggtgttatgcccaata |
34615688 |
T |
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| Q |
110 |
ttca |
113 |
Q |
| |
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|||| |
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| T |
34615689 |
ttca |
34615692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 5338665 - 5338617
Alignment:
| Q |
129 |
taagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaa |
177 |
Q |
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|||||| |||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
5338665 |
taagaacgttggaaaaggaaaaagcgaaattggatatgcttctcaagaa |
5338617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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