View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_41 (Length: 365)
Name: NF11635_low_41
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 131 - 332
Target Start/End: Complemental strand, 12561444 - 12561244
Alignment:
| Q |
131 |
ataaatttcattctgcatcaaattattctcttaaaaattcataacgtttctaaataagaaattgaaaaatgaagaaggattggggtatattgtggggaat |
230 |
Q |
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| T |
12561444 |
ataaatttcattctgcatcaaattattctcttaagaattcataacgtttctaa-taagaaattgaaaaatgaagaaggattggggtatattgtggggaat |
12561346 |
T |
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| Q |
231 |
caattatgcacacacctttatattattttttaatttaatgtgtacgattatatatgaatccataatgcactcactcaccagctactgctagtcactatat |
330 |
Q |
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| T |
12561345 |
caattatgcaaacacctttatattattttttaatttaatgtgtacgattatatatgaatccataatgcactcactcactagcttctgctagtcactatat |
12561246 |
T |
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| Q |
331 |
at |
332 |
Q |
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|| |
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| T |
12561245 |
at |
12561244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 12561545 - 12561439
Alignment:
| Q |
1 |
gcattgttatatacag-agttaagttataaaaagtttgactttcattcaatcttaattgtttgattttnnnnnnnttcgactttcatcttatcacaatca |
99 |
Q |
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|||||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
12561545 |
gcattgttatatgcaggagtcaagttataaaaagttcgacttttattcaatcttaattgtttgattttaaaaaagttcgactttcatcttatcgcaatca |
12561446 |
T |
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| Q |
100 |
tataaat |
106 |
Q |
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||||||| |
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| T |
12561445 |
tataaat |
12561439 |
T |
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