View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_43 (Length: 363)
Name: NF11635_low_43
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 104 - 363
Target Start/End: Original strand, 54028839 - 54029098
Alignment:
| Q |
104 |
ccatggatattctcgcaaataaaatctgcaacgaacacggaacgagtaacataacgggtatctgtaagtaaaatcaacagatatttcaaccgtcgttact |
203 |
Q |
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| T |
54028839 |
ccatggatattctcgcaaataaaatctgcaacgaacacggaacgagtaacataacgggcatctgtgagtaaaatcaacagatatttcaaccgtcgttact |
54028938 |
T |
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| Q |
204 |
taatgaatataaatgttaatttaataatgcatgtatttgcagacatccgtaccaactgtgcccgttaataaattgaataattaaatatccttatttaaaa |
303 |
Q |
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| T |
54028939 |
taatgaatataaatgttgatttaataatgcatgtacctacagacatccgtatcgactatgcccattaataaattgaataattaaatatccttagttaaaa |
54029038 |
T |
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| Q |
304 |
aatctaattagtgcatttcaaatttagttnnnnnnnncctaaatactatttagattcttc |
363 |
Q |
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| T |
54029039 |
aatctaattagtgcatttcaaatttagttaaaaaaaaactaaatactatttagattcttc |
54029098 |
T |
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