View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_44 (Length: 357)
Name: NF11635_low_44
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 50 - 339
Target Start/End: Original strand, 9453035 - 9453324
Alignment:
| Q |
50 |
taactgggaggaaaacgataggatcttaatagtagcttaatgaaaagggattgtgtatccttgtgagagtgacaaagagaaataaggtttgtaaattaaa |
149 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9453035 |
taactgggaggcaaacgataggatcttaatagtagcttaatgaaaaggaattgtgtatccttgtgagagtgacaaagagtaataaggtttgtaaattaaa |
9453134 |
T |
|
| Q |
150 |
gcttctatactaagctaaatactttcttcaattttcattgcttattcattccttttcccaaatgagatacttatagtactatcagtatattcaggaaagc |
249 |
Q |
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||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9453135 |
gctgctacactaagctaaatactttcttcaattttcatttcttattcaatccttttcccaaatgagatacttatagtactatcagtttattcaggaaagc |
9453234 |
T |
|
| Q |
250 |
ataacaaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgc |
339 |
Q |
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|| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9453235 |
atcaaaaaggaatataagtcactaaggcagttacaacataaagtagtaaaacatgaatgcattagaattcttatccaattatctaggtgc |
9453324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 37684939 - 37684620
Alignment:
| Q |
21 |
gaggaatcaccgacgatgtattatgacactaactgggaggaaaacgataggatcttaatagtagcttaatgaaaagggattgtgtatccttgtgagagtg |
120 |
Q |
| |
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||||||||||| | |||||||| ||| ||||||| |||| | |||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
37684939 |
gaggaatcaccaatgatgtattgtgatgctaactgtgaggcatacgatatgatcttaatagtagcttaatgtaaaggaattgtgtatcagtgtgagagtg |
37684840 |
T |
|
| Q |
121 |
acaaagagaa-ataaggtttgtaaattaaagcttctatactaagctaaatactttcttcaattttcattgcttattcattccttttcccaaatgagatac |
219 |
Q |
| |
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||| |||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
37684839 |
acagagagtagataaggtttgtaaactaaagctgctatactaagctaaatactttcttcaatttttattgcttattcattccttttcccaaaaggagtac |
37684740 |
T |
|
| Q |
220 |
ttatagtactatcagtatattcaggaaagcataacaaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattc |
319 |
Q |
| |
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||||||||||||||||| ||||| | |||||||| |||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37684739 |
ttatagtactatcagtacattcatgtaagcataaaaaaggaatttaagccactaaggcagttacagcataaagtagtaaaacgtgaatgcattagaattc |
37684640 |
T |
|
| Q |
320 |
ttatccaattatctaggtgc |
339 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37684639 |
ttatccaattatctaggtgc |
37684620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 38944793 - 38944481
Alignment:
| Q |
26 |
atcaccgacgatgtattatgacactaactgggaggaaaacgataggatcttaatagtagcttaatgaaaagggattgtgtatccttgtgagagtgacaaa |
125 |
Q |
| |
|
|||||| | |||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
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|
| T |
38944793 |
atcaccaatgatgtattgtgacactaactgtgagggaaacaataggatcttaatagtagcttaatgaaaaggatttgtgtatcagtgtgagagtgacata |
38944694 |
T |
|
| Q |
126 |
gagaaataaggtttgtaaattaaagcttctatactaagctaaatactttcttcaattttcattgcttattcattccttttcccaaatgagatacttatag |
225 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38944693 |
gagtaataaggtttgtaaattaaagctgctatactaagctaaatacttgcttcaattttcattgcttattcattcc-tttcccaaatgggatacttatag |
38944595 |
T |
|
| Q |
226 |
tactatcagtatattcaggaaagcataacaaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatcc |
325 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
38944594 |
tactatcggtacattcatgaaagcatcgaaaaggaatctaagtcactaaggcagttacaacagaaagcagtaaaatgtgaatgcattagaattcttatcc |
38944495 |
T |
|
| Q |
326 |
aattatctaggtgc |
339 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38944494 |
aattatctaggtgc |
38944481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 7498822 - 7499143
Alignment:
| Q |
21 |
gaggaatcaccgacgatgtattatgacactaactgggaggaaaacgataggatcttaatagtagcttaatgaaaagggattgtgtatccttgtgagagtg |
120 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||| |||| | |||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||| |
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|
| T |
7498822 |
gaggaatcaccaacgatgtattgtgatgctaactatgaggcatacgataagatcttaatagtagcttaatgaaaaggaattatgtatcagtgtgagagtg |
7498921 |
T |
|
| Q |
121 |
acaaagag-aaataaggtttgtaaattaaagcttctatactaagctaaatactttcttcaattttcattgcttattcattccttttcccaaatgagatac |
219 |
Q |
| |
|
||| |||| |||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||| |
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|
| T |
7498922 |
acagagagtaaataaggtttgtaaactacagctgctatactaagctaaatactttcttcaattttcattgcttattcattccttttcctaaaaggggtac |
7499021 |
T |
|
| Q |
220 |
ttatagtactat--cagtatattcaggaaagcataacaaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaat |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| | |||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
7499022 |
ttatagtactatatcagtgcattcaggaaagcattaaaaaggaatttaagccactaaggcagttacaacataaagtagtaaaacatgaatgcattagaat |
7499121 |
T |
|
| Q |
318 |
tcttatccaattatctaggtgc |
339 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
7499122 |
tcttatccaattatctaggtgc |
7499143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 21545755 - 21545674
Alignment:
| Q |
255 |
aaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgc |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21545755 |
aaaggaatataagccactaaggcagttacaacagaaagta---aaacgtgaatgcattagaattcttatccaattatctaggtgc |
21545674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 21545861 - 21545788
Alignment:
| Q |
21 |
gaggaatcaccgacgatgtattatgacactaactgggaggaaaacgataggatcttaatagtagcttaatgaaa |
94 |
Q |
| |
|
||||||| ||| |||||||| | || ||||||||| |||| |||| || ||||||||||||||||||||||||| |
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|
| T |
21545861 |
gaggaattaccaacgatgtaatgtggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaa |
21545788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 18329282 - 18328982
Alignment:
| Q |
26 |
atcaccgacgatgtattatgacactaactgggaggaaaacgataggatcttaatagtagcttaatgaaaagggattgtgtatccttgtgagagtgacaaa |
125 |
Q |
| |
|
|||||| | |||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| | |
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|
| T |
18329282 |
atcaccaatgatgtattgtgacactaactgtgagggaaacgataggatcttaatagt--cttaatgaaaaggatttgtgtatcagtgtgagagtgacaga |
18329185 |
T |
|
| Q |
126 |
gagaaataaggtttgtaaattaaagcttctatactaagctaaatactttcttcaattttcattgcttattcattccttttcccaaatgagatacttatag |
225 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18329184 |
gagtaataaggtttgtaaattaaagctgctatactaagctaaatacttgcttcaattttcattgcttattcattcc-tttcccaaatgggatacttatag |
18329086 |
T |
|
| Q |
226 |
tactatcagtatattcaggaaagcataacaaaggaatataagtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatcc |
325 |
Q |
| |
|
||| || |||| |||||| | |||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
18329085 |
tac------tacattc----aagcatcaaaaaggaatctaattatctaaggcagttacaacagaaagtagtaaaatgtgaatgcattagaattcttatcc |
18328996 |
T |
|
| Q |
326 |
aattatctaggtgc |
339 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
18328995 |
aattatctacgtgc |
18328982 |
T |
|
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