View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_45 (Length: 347)
Name: NF11635_low_45
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 4486775 - 4486456
Alignment:
| Q |
18 |
attattaattcaataaatatccttgtatgtatgaagttgaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatatatg |
117 |
Q |
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| T |
4486775 |
attattaattcaataaatatccttgtatgtatgaagttgaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatatatg |
4486676 |
T |
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| Q |
118 |
aactaaagatcttgtaatttcatgcagatgttccagaaaggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagt |
217 |
Q |
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| T |
4486675 |
aactaaagatcgtgtaatttcatgcagatgttccagaaaggctctccccttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagt |
4486576 |
T |
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| Q |
218 |
tgaaaagattggaagaaaagtggttaattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatg |
317 |
Q |
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| T |
4486575 |
tgaaaagattggaagaaaagtggttaattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatg |
4486476 |
T |
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| Q |
318 |
ggtcctatatgtcatctctg |
337 |
Q |
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| T |
4486475 |
ggtcctatatgtcatgtctg |
4486456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 4480528 - 4480333
Alignment:
| Q |
142 |
cagatgttccagaaaggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggt |
241 |
Q |
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| T |
4480528 |
cagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaagagattggaagaaaagtgg- |
4480430 |
T |
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| Q |
242 |
taattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgtcatctctgc |
338 |
Q |
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| T |
4480429 |
tacttacctcacaggattgctccaataatgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctctatatgttatctctgc |
4480333 |
T |
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