View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_47 (Length: 342)
Name: NF11635_low_47
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 22340784 - 22340468
Alignment:
| Q |
11 |
cataggagcaatcatcctgaagtttctcaaaaggaacgtttgaacaatgtttggcgtactccaagtcgtggtggtata--gacaaattaacattattcac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
22340784 |
cataggagcaatcatcctgaagtttctcaaaaggaacgtttgaacaatgtttggcgtactccaagtcgtggtcatatatagacaaattaacattattcac |
22340685 |
T |
|
| Q |
109 |
atacgcccatttcttaaacttcctacgagacttctgaatcacacaacattacatgtttgtataacacgcgtgaacatacgaaccggtagagtcttccaat |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
22340684 |
atacgcccattttttaaacttcctacgagacttctgaatcacacaacattacatgtttgtataacacacctgaacatacgaaccggtagagtcttccaat |
22340585 |
T |
|
| Q |
209 |
agagtaatactcagtagtttacgaagacggctaaacgaggccaaatgaaagtggatcgaagagctccacaacttcttgtaggcgtattgaacgataccac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22340584 |
agagtaatactcagtagtttacgaagacggctaaacgaggccaaatgaaagtggatcaaagagctccacaacttcttgtaggcgtactgaacgataccac |
22340485 |
T |
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| Q |
309 |
actcctcaaccataaat |
325 |
Q |
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||||||||||||||||| |
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| T |
22340484 |
actcctcaaccataaat |
22340468 |
T |
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