View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_48 (Length: 339)
Name: NF11635_low_48
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 53612694 - 53612376
Alignment:
| Q |
11 |
acagaaccatctgaattcaaccggtagattgaaaacagacaaataaaactatctgaagttgtggctggccaagtgccaaaactaaatcctaaaggacttg |
110 |
Q |
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| T |
53612694 |
acagaaccatctgaattcaaccggtagattgaaaacagacaaataaaattatctgaagttgtggctggccaagtgccaaaactaaatcctaaaggacttg |
53612595 |
T |
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| Q |
111 |
gactaagtttcctagagaaactttgttttctactctcagtaaaagccattatttataggtctaaagacattgcatggctgcattactcttccatcacaac |
210 |
Q |
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| T |
53612594 |
gactaagtttcctagagaaactttgttttctactctcagtaaaagccattatttataggtctaaagacattgcatggctgcattactcttccatcacgac |
53612495 |
T |
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| Q |
211 |
ttcttcttctttttcttcaagacatatatttctctaaaaac----ttggtaattgcttcatcatctttttcatgcatacatcgatcacatgcatgaatgc |
306 |
Q |
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| T |
53612494 |
ttcttcttctttttcttcaagacatatatttctctacaaacttaattggtaattgcttcatcatctttttcatgcatacatcgatcacatgcatgaatgc |
53612395 |
T |
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| Q |
307 |
atactacttttgatgcttg |
325 |
Q |
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| T |
53612394 |
atactacttttgatgcttg |
53612376 |
T |
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