View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_low_5 (Length: 678)
Name: NF11635_low_5
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 22 - 667
Target Start/End: Original strand, 28887107 - 28887753
Alignment:
| Q |
22 |
gacctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28887107 |
gacctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatatcttaaagttggc |
28887206 |
T |
|
| Q |
122 |
tcttggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaagaaggtcatgtatgaaaagag |
221 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28887207 |
tcttggttcttgcgcaactattcataatggtgatgtttcagatgatatcacaatagaaggaagtggagctggctttcaagaaggtcatgtatgaaaagag |
28887306 |
T |
|
| Q |
222 |
atgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcactttccccccaacaaaatgtg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28887307 |
atgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcacttttcccccaacaacatgtg |
28887406 |
T |
|
| Q |
322 |
agtttttaatgtatatacattactcaatatataattatgacttgtttgattgtgtttttgctttttagtatttgataactgtttgatgtctacctct-nn |
420 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28887407 |
agtttttaaagtatatacattactcaatatataattatgacttgtttgattgtgtttttgctttttagtatttgataattgtttgatgtctacctctaaa |
28887506 |
T |
|
| Q |
421 |
nnnnnntgtttgatgtccagaaaatatttcaattgaaattattaagtgaaacacataaatatctggtttattgttttttaataaagaaaattttagatga |
520 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
28887507 |
aaaaaatgtttgatgtctagaaaatatttcaattgaaattattaagtgaaacacataaatatccgttttattgttttttaataatgaaaattttagatga |
28887606 |
T |
|
| Q |
521 |
gttgagttttaaaatttaccagaggttagggtagactttaactaaagaagtaagttatcacattaatagtgaaaattgaactcatacttttataagatat |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28887607 |
gttgagttttaaaatttaccagaggttagggcagactttaactaaagaagtaatttatcacattaatagtgaaaattgaactcatacttttataagatat |
28887706 |
T |
|
| Q |
621 |
gagtcaactctttatcaattgaatcaacttatatttctaacgtctct |
667 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
28887707 |
gagtcaactctttatcaactgaatcaacttatatttttaacgtctct |
28887753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 28882102 - 28882411
Alignment:
| Q |
22 |
gacctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggc |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| || || | || ||||||| |||| |||||||| |||||||||| || | |
|
|
| T |
28882102 |
gacctatcttggcatgtttactctattatagtgtctctatcaacctacctaaagaagtttcagtttgggatgatgaagaatatgttgtcttaaagctgcc |
28882201 |
T |
|
| Q |
122 |
tcttggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaagaaggtcatgtatgaaaagag |
221 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||| || | |||||||||||||||||||| ||| | | || ||||| ||||||||||||| | |
|
|
| T |
28882202 |
tcttggttcttgtaggactattcctaatggtgacattttaaatgatatcacaatagaaggaggtgcacaaggctatcaagtc---catgtatgaaaagtg |
28882298 |
T |
|
| Q |
222 |
atgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcac-tttccccccaacaaaatgt |
320 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||| | |
|
|
| T |
28882299 |
atgataaactttgtgactttgttgtcactcacatactagtaatagttggtttaagggaagggaaatgatatctcattcacttttccccccattaaaatat |
28882398 |
T |
|
| Q |
321 |
gagtttttaatgt |
333 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28882399 |
aagtttttaatgt |
28882411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 28889095 - 28889169
Alignment:
| Q |
66 |
ctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggctcttggttctagtgggact |
140 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| || |||||| ||||||| | |||| | |||||||| |
|
|
| T |
28889095 |
ctacctaaggagggtttggtttgggttgatggagaatatcatatcttaaggttggctatgggtttttgtgggact |
28889169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University